View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17539_high_29 (Length: 248)

Name: NF17539_high_29
Description: NF17539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17539_high_29
NF17539_high_29
[»] chr2 (4 HSPs)
chr2 (20-238)||(43867464-43867682)
chr2 (20-196)||(43863972-43864149)
chr2 (18-231)||(43875141-43875351)
chr2 (86-189)||(38989109-38989212)
[»] chr4 (3 HSPs)
chr4 (75-231)||(52186780-52186936)
chr4 (119-198)||(15527301-15527380)
chr4 (119-159)||(35968336-35968376)
[»] scaffold0438 (1 HSPs)
scaffold0438 (83-189)||(5312-5418)
[»] chr3 (11 HSPs)
chr3 (62-172)||(480963-481073)
chr3 (62-213)||(476010-476161)
chr3 (75-169)||(778176-778270)
chr3 (80-189)||(1304691-1304800)
chr3 (80-172)||(1186243-1186335)
chr3 (80-172)||(1204307-1204399)
chr3 (82-145)||(5361014-5361077)
chr3 (132-210)||(2996512-2996590)
chr3 (104-168)||(4149603-4149667)
chr3 (104-168)||(4165375-4165439)
chr3 (75-147)||(7125963-7126035)
[»] chr5 (3 HSPs)
chr5 (83-168)||(33958061-33958146)
chr5 (105-190)||(19658349-19658434)
chr5 (105-190)||(19675188-19675273)
[»] chr7 (2 HSPs)
chr7 (96-172)||(32413636-32413712)
chr7 (75-148)||(6889182-6889255)
[»] chr6 (5 HSPs)
chr6 (96-169)||(7115536-7115609)
chr6 (96-169)||(7120608-7120681)
chr6 (96-169)||(7124012-7124085)
chr6 (96-148)||(7140726-7140778)
chr6 (96-148)||(8680340-8680392)
[»] scaffold0896 (1 HSPs)
scaffold0896 (96-169)||(2255-2328)
[»] chr1 (1 HSPs)
chr1 (118-150)||(42602903-42602935)


Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 43867464 - 43867682
Alignment:
Q  20 aagagataaaaagtgagacaggaattcggctaaacttttctcggtcttaaagttcgaagaacttaatgtaatagtaggaagacccttccagagattgatc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43867464 aagagataaaaagtgagacaggaattcggctaaacttttctcggtcctaaagttcgaagaacttaatgtaatagtaggaagacccttccagagagtgatc 43867563  T
Q  120 catcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaaggacaatacgtgaatgagaatacaatcagttaagttactgataatgtctt 219  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  43867564 catcttttggacaaaatgcaagtttgagcggcctcttttgcgttcaaaaaggacagtacgtgaatgagaatacaatcagtcaagttactgataatgtctt 43867663  T
Q  220 cgttttcgttgtgcctatg 238  Q
    |||||||||||||| ||||    
T  43867664 cgttttcgttgtgcttatg 43867682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 43863972 - 43864149
Alignment:
Q  20 aagagataaaaagtgagacaggaattcggctaaacttttctcggtcttaaagttcgaagaacttaatgtaat-agtaggaagacccttccagagattgat 118  Q
    |||||||||||| |||||||| ||||||  |||||||| || |||| ||||||| ||||||||||||||||| ||||||||||| |||||| ||||||||    
T  43863972 aagagataaaaattgagacagaaattcgcttaaactttccttggtcctaaagtttgaagaacttaatgtaattagtaggaagactcttccaaagattgat 43864071  T
Q  119 ccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaaggacaatacgtgaatgagaatacaatc 196  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| || ||||||||||||||||||    
T  43864072 ccatcttttggacaaaatgcaagtttgaacggccttttttgcattcaaaaaggacagtatgtgaatgagaatacaatc 43864149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 43875141 - 43875351
Alignment:
Q  18 caaagagataaaaagtgagacaggaattcggctaaacttttctcggtcttaaagttcgaagaacttaatgtaatagtaggaagacccttccagagattga 117  Q
    |||||||||||||| |||||||||||| |    ||| ||| || |||| ||||||   | |||| |||||||| ||| ||||||| |||||| |||||||    
T  43875141 caaagagataaaaattgagacaggaatacactgaaagtttccttggtcctaaagt---atgaacataatgtaagagtgggaagactcttccaaagattga 43875237  T
Q  118 tccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaaggacaatacgtgaatgagaatacaatcagttaagttactgataatgtc 217  Q
    |||||||||||||||||||||||||||||||| |||||||||| || |||||||||| || ||||||||||||||||||  | |||||||||||||||||    
T  43875238 tccatcttttggacaaaatgcaagtttgaacgacctcttttgcatttaaaaaggacactatgtgaatgagaatacaatcgatcaagttactgataatgtc 43875337  T
Q  218 ttcgttttcgttgt 231  Q
    ||| |||| |||||    
T  43875338 ttcatttttgttgt 43875351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 189
Target Start/End: Complemental strand, 38989212 - 38989109
Alignment:
Q  86 tgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaaggacaatacgtgaatg 185  Q
    ||||||||| | ||||| |||||||||| ||||||||||||||||||||| ||| |||||||| |||| | ||||||| | |||||||| || ||||| |    
T  38989212 tgtaatagtggaaagactcttccagagaatgatccatcttttggacaaaacgcatgtttgaacagcctgtattgcgtttagaaaggacagtatgtgaagg 38989113  T
Q  186 agaa 189  Q
    ||||    
T  38989112 agaa 38989109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 75 - 231
Target Start/End: Complemental strand, 52186936 - 52186780
Alignment:
Q  75 gaagaacttaatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaaggaca 174  Q
    |||||||||| ||||| ||| ||||||| | |||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||| |    
T  52186936 gaagaacttagtgtaagagtgggaagactcctccagagaatgatccatcttttggacaaaatgcaggtttgaacggcctgttttgcgttcagaaaggaga 52186837  T
Q  175 atacgtgaatgagaatacaatcagttaagttactgataatgtcttcgttttcgttgt 231  Q
     || ||| | ||||| | ||||||| |||| ||||||||||||||| |||| |||||    
T  52186836 gtaggtggaggagaacagaatcagtcaagtcactgataatgtcttcatttttgttgt 52186780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 198
Target Start/End: Original strand, 15527301 - 15527380
Alignment:
Q  119 ccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaaggacaatacgtgaatgagaatacaatcag 198  Q
    |||||||||||||| |||||||||| |||| || ||||| | | ||||||| ||||| | |||||||| ||| |||||||    
T  15527301 ccatcttttggacagaatgcaagttcgaacagcgtctttagtgctcaaaaatgacaaaatgtgaatgataatgcaatcag 15527380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 35968376 - 35968336
Alignment:
Q  119 ccatcttttggacaaaatgcaagtttgaacggcctcttttg 159  Q
    ||||||||||||||||| ||||||||||||| ||| |||||    
T  35968376 ccatcttttggacaaaacgcaagtttgaacgacctgttttg 35968336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 83 - 189
Target Start/End: Complemental strand, 5418 - 5312
Alignment:
Q  83 taatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaaggacaatacgtga 182  Q
    |||||||| ||| ||||||  ||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| |||||||||||||| || ||||    
T  5418 taatgtaagagtgggaagagtcttccagagattgatccatcttttggataaaatgcatgtttgaacggcctctcttgtgttcaaaaaggacagtatgtga 5319  T
Q  183 atgagaa 189  Q
    |||||||    
T  5318 atgagaa 5312  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 62 - 172
Target Start/End: Complemental strand, 481073 - 480963
Alignment:
Q  62 ggtcttaaagttcgaagaacttaatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcg 161  Q
    |||| ||||||| ||||||||||| ||||  || ||||||  ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||    
T  481073 ggtcctaaagtttgaagaacttaaggtaagcgtgggaagagtcttccagagattgatccatcttttggataaaatacaagtttgaacggcctctttggcg 480974  T
Q  162 ttcaaaaagga 172  Q
    || ||||||||    
T  480973 tttaaaaagga 480963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 213
Target Start/End: Complemental strand, 476161 - 476010
Alignment:
Q  62 ggtcttaaagttcgaagaacttaatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcg 161  Q
    |||| ||||||| |||||||||| |||||  || ||||||   |||||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||    
T  476161 ggtcctaaagtttgaagaacttagtgtaagggtgggaagagtattccagagattgatccatcttttggataaaatacaagtttgaacggcttctttggcg 476062  T
Q  162 ttcaaaaaggacaatacgtgaatgagaatacaatcagttaagttactgataa 213  Q
    || |||||||| | |  ||||| |||||||||||| | ||| | ||||||||    
T  476061 tttaaaaaggagagtgtgtgaaggagaatacaatctgataaatcactgataa 476010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 169
Target Start/End: Original strand, 778176 - 778270
Alignment:
Q  75 gaagaacttaatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaa 169  Q
    |||||||||||||||| ||| || |||   ||||||||||||||||||||||||||||||||||||||||| || |||||||| || ||||||||    
T  778176 gaagaacttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttggactgcctctttggctttcaaaaa 778270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 80 - 189
Target Start/End: Original strand, 1304691 - 1304800
Alignment:
Q  80 acttaatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaaggacaatacg 179  Q
    ||||||||||| ||| | ||||  |||||||||||||||||||||||| || ||||||||||||||||| |||||||| || ||||||||||| | || |    
T  1304691 acttaatgtaagagtggaaagagtcttccagagattgatccatcttttcgataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatg 1304790  T
Q  180 tgaatgagaa 189  Q
    ||| ||||||    
T  1304791 tgattgagaa 1304800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 172
Target Start/End: Complemental strand, 1186335 - 1186243
Alignment:
Q  80 acttaatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaagga 172  Q
    ||||||||||| ||| | ||||  |||||||||||||||||||||||| || ||||||||||||||||| |||||||| || |||||||||||    
T  1186335 acttaatgtaagagtggaaagagtcttccagagattgatccatcttttcgataaaatgcaagtttgaactgcctctttggcattcaaaaagga 1186243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 172
Target Start/End: Complemental strand, 1204399 - 1204307
Alignment:
Q  80 acttaatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaagga 172  Q
    ||||||||||| ||| | ||||  |||||||||||||||||||||||| || ||||||||||||||||| |||||||| || |||||||||||    
T  1204399 acttaatgtaagagtggaaagagtcttccagagattgatccatcttttcgataaaatgcaagtttgaactgcctctttggcattcaaaaagga 1204307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 5361014 - 5361077
Alignment:
Q  82 ttaatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttg 145  Q
    |||||| || ||| ||||||  ||||||||||||| ||||||||||||| ||||||||||||||    
T  5361014 ttaatgcaagagttggaagagtcttccagagattggtccatcttttggataaaatgcaagtttg 5361077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 2996512 - 2996590
Alignment:
Q  132 aaaatgcaagtttgaacggcctcttttgcgttcaaaaaggacaatacgtgaatgagaatacaatcagttaagttactga 210  Q
    ||||||||||||||||| || ||||||| ||||||||| || | || ||||| || || |||||||||||||| |||||    
T  2996512 aaaatgcaagtttgaactgcatcttttgtgttcaaaaatgaaagtatgtgaaggataacacaatcagttaagtcactga 2996590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 4149667 - 4149603
Alignment:
Q  104 cttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaa 168  Q
    ||||||||||||  |||||||  ||||||||| ||| ||||||||||||||||| | ||||||||    
T  4149667 cttccagagattcttccatctcgtggacaaaacgcaggtttgaacggcctctttggtgttcaaaa 4149603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 4165439 - 4165375
Alignment:
Q  104 cttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaa 168  Q
    ||||||||||||  |||||||  ||||||||| ||| ||||||||||||||||| | ||||||||    
T  4165439 cttccagagattcttccatctcgtggacaaaacgcaggtttgaacggcctctttggtgttcaaaa 4165375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 7126035 - 7125963
Alignment:
Q  75 gaagaacttaatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaa 147  Q
    |||||| |||||||||  || |||||||  |||||||||||  |||||||||||||||| || ||||||||||    
T  7126035 gaagaaattaatgtaagggttggaagacgtttccagagattcttccatcttttggacaagatacaagtttgaa 7125963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 168
Target Start/End: Original strand, 33958061 - 33958146
Alignment:
Q  83 taatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaa 168  Q
    |||||||| |||  |||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||| | | ||||||||    
T  33958061 taatgtaagagtgtgaagagtcttccagagattgatccatcttttggataaaatgcaagtttgaacggcctctctggtgttcaaaa 33958146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 190
Target Start/End: Original strand, 19658349 - 19658434
Alignment:
Q  105 ttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaaggacaatacgtgaatgagaat 190  Q
    |||||||||||  |||||||  |||||||||  |||||||||||||| | |||||||| |||||| ||||| | ||||| ||||||    
T  19658349 ttccagagattcctccatctcgtggacaaaacacaagtttgaacggcatattttgcgtccaaaaatgacaaaatgtgaaggagaat 19658434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 190
Target Start/End: Original strand, 19675188 - 19675273
Alignment:
Q  105 ttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaaggacaatacgtgaatgagaat 190  Q
    |||||||||||  |||||||  |||||||||  |||||||||||||| | |||||||| |||||| ||||| | ||||| ||||||    
T  19675188 ttccagagattcctccatctcgtggacaaaacacaagtttgaacggcatattttgcgtccaaaaatgacaaaatgtgaaggagaat 19675273  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 32413712 - 32413636
Alignment:
Q  96 ggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaagga 172  Q
    ||||||| ||||||||||||  |||||||| ||||||||||||||||||||||||| | ||| | ||||||| ||||    
T  32413712 ggaagacgcttccagagattcttccatcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagagga 32413636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 6889255 - 6889182
Alignment:
Q  75 gaagaacttaatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaac 148  Q
    |||||||||||| |||  |||||||||   |||||||||||| ||||||||||||| | |||||||||||||||    
T  6889255 gaagaacttaatataagggtaggaagatatttccagagattgttccatcttttggatagaatgcaagtttgaac 6889182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 169
Target Start/End: Original strand, 7115536 - 7115609
Alignment:
Q  96 ggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaa 169  Q
    ||||||| ||||||||||||  ||||||||||||||||||  ||||||||||| || | ||| | |||||||||    
T  7115536 ggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaa 7115609  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 169
Target Start/End: Original strand, 7120608 - 7120681
Alignment:
Q  96 ggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaa 169  Q
    ||||||| ||||||||||||  ||||||||||||||||||  ||||||||||| || | ||| | |||||||||    
T  7120608 ggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaa 7120681  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 169
Target Start/End: Original strand, 7124012 - 7124085
Alignment:
Q  96 ggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaa 169  Q
    ||||||| ||||||||||||  ||||||||||||||||||  ||||||||||| || | ||| | |||||||||    
T  7124012 ggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaa 7124085  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 7140726 - 7140778
Alignment:
Q  96 ggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaac 148  Q
    ||||||| |||||| | |||  ||||||||||||||||||| |||||||||||    
T  7140726 ggaagacacttccatatattcttccatcttttggacaaaatacaagtttgaac 7140778  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 8680340 - 8680392
Alignment:
Q  96 ggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaac 148  Q
    ||||||| |||||| | |||  ||||||||||||||||||| |||||||||||    
T  8680340 ggaagacacttccatatattcttccatcttttggacaaaatacaagtttgaac 8680392  T

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Target: scaffold0896 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 2328 - 2255
Alignment:
Q  96 ggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaa 169  Q
    ||||||| ||||||||||||  |||||||||||| |||||  ||||||||||| || | ||| | |||||||||    
T  2328 ggaagacacttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaaaa 2255  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 150
Target Start/End: Original strand, 42602903 - 42602935
Alignment:
Q  118 tccatcttttggacaaaatgcaagtttgaacgg 150  Q
    |||||||||||||||| ||||||||||||||||    
T  42602903 tccatcttttggacaagatgcaagtttgaacgg 42602935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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