View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17539_high_31 (Length: 247)
Name: NF17539_high_31
Description: NF17539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17539_high_31 |
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| [»] scaffold1653 (1 HSPs) |
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| [»] scaffold1033 (1 HSPs) |
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| [»] scaffold1029 (1 HSPs) |
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| [»] scaffold1983 (1 HSPs) |
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Alignment Details
Target: scaffold1653 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold1653
Description:
Target: scaffold1653; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 52 - 222
Target Start/End: Complemental strand, 1516 - 1346
Alignment:
| Q |
52 |
taggatatgtagctggctagcattgtattatggtggttagcgacttctttatattttcctgataaatgactcattcgtgaacttgaagttgtcaacaagt |
151 |
Q |
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|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1516 |
taggatatgtggctggctagcattgtattatggcggttagcgacttctttatattttcctgataaatgactcattcgtgaacttgaagttgtcaacaagt |
1417 |
T |
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| Q |
152 |
ttgatttattttgataaagcaaggctctctgtggcaacatttcatcaacccagttaagacagttaaaacca |
222 |
Q |
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| T |
1416 |
ttgatttattttgataaagcaaggctctctgtggcaacacttcatcaacccagttaagacagtcaaaacca |
1346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 165
Target Start/End: Original strand, 1149 - 1284
Alignment:
| Q |
30 |
aatacatgaaaccaagcttttataggatatgtagctggctagcattgtattatggtggttagcgacttctttatattttcctgataaatgactcattcgt |
129 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||| ||||| ||||||| |||||||||||||||||||||||||| | ||||| | |
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| T |
1149 |
aatacatgaaaccaagcttttataggatatgtggttggctagcattgtgttatgatggttagtgacttctttatattttcctgataaataattcattaat |
1248 |
T |
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| Q |
130 |
gaacttgaagttgtcaacaagtttgatttattttga |
165 |
Q |
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| T |
1249 |
gaaattgaattcgttaacaagtttggtttattttga |
1284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 165
Target Start/End: Original strand, 1149 - 1284
Alignment:
| Q |
30 |
aatacatgaaaccaagcttttataggatatgtagctggctagcattgtattatggtggttagcgacttctttatattttcctgataaatgactcattcgt |
129 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||| ||||| ||||||| |||||||||||||||||||||||||| | ||||| | |
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| T |
1149 |
aatacatgaaaccaagcttttataggatatgtggttggctagcattgtgttatgatggttagtgacttctttatattttcctgataaataattcattaat |
1248 |
T |
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| Q |
130 |
gaacttgaagttgtcaacaagtttgatttattttga |
165 |
Q |
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| T |
1249 |
gaaattgaattcgttaacaagtttggtttattttga |
1284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 28578870 - 28578806
Alignment:
| Q |
19 |
acaacaatatcaatacatgaaaccaagcttttataggatatgtagctggctagcattgtattatg |
83 |
Q |
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| T |
28578870 |
acaacaatatccatacatgaaaccaagcttttataggatatgtggctgactagcattgtattatg |
28578806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 52 - 164
Target Start/End: Complemental strand, 28564660 - 28564548
Alignment:
| Q |
52 |
taggatatgtagctggctagcattgtattatggtggttagcgacttctttatattttcctgataaatgactcattcgtgaacttgaagttgtcaacaagt |
151 |
Q |
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|||||||||| | ||||||||||||||||||| ||| ||| || |||||| | ||| |||||||||||| ||||| |||| |||||||||| |||||| |
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| T |
28564660 |
taggatatgtggttggctagcattgtattatgatggctagtgatttctttgtgtttacctgataaatgatgcattcatgaaattgaagttgttaacaagg |
28564561 |
T |
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| Q |
152 |
ttgatttattttg |
164 |
Q |
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||| |||| |||| |
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| T |
28564560 |
ttggtttactttg |
28564548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 196
Target Start/End: Complemental strand, 28589665 - 28589632
Alignment:
| Q |
163 |
tgataaagcaaggctctctgtggcaacatttcat |
196 |
Q |
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| T |
28589665 |
tgatagagcaaggctctctgtggcaacatttcat |
28589632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1983 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1983
Description:
Target: scaffold1983; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 33 - 1
Alignment:
| Q |
18 |
aacaacaatatcaatacatgaaaccaagctttt |
50 |
Q |
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| T |
33 |
aacaacaatatcaatacatgaaatcaagctttt |
1 |
T |
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