View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17539_high_33 (Length: 237)
Name: NF17539_high_33
Description: NF17539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17539_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 26867085 - 26867308
Alignment:
| Q |
1 |
cagactaatcgggttaaacttctaaattatcatgttgacgccaacgaccaatacagattagttaaccaactctttgcatcgtcacttccatgtaaaatgt |
100 |
Q |
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| T |
26867085 |
cagactaatcgggttaaacttctaaattatcatgcagacgccaacgaccaatacagattagttaaccaactctttgcatcgtcacttctatgtaaaacgt |
26867184 |
T |
|
| Q |
101 |
acattcattagttcaggcaacaaattagactatttcgtttccacccttctcacgtacttatgttcgaatcatattatctaaacannnnnnnagggattta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26867185 |
acattcattagttcaggcaacaaattagactatttcgtttccacccttctcacgtacttatgttcgaatcatattatctaaacattttttaagggattta |
26867284 |
T |
|
| Q |
201 |
tgaat--tatataatccaaaaact |
222 |
Q |
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||||| ||||||||||||||||| |
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| T |
26867285 |
tgaattatatataatccaaaaact |
26867308 |
T |
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