View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17539_high_36 (Length: 219)
Name: NF17539_high_36
Description: NF17539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17539_high_36 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 45464112 - 45463930
Alignment:
| Q |
16 |
gtttcataaacgcgtgggtgaaaaattcgaatttgcattaagcgtcataaacgcatgcgaggaaatgggtatttgaattccttgatgttatgtgtgcaag |
115 |
Q |
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| T |
45464112 |
gtttcataaacgcgtgggtgaaaaattcgaatttgcattaagcgtcataaacgcatgagaggaaatgggtatttgaattccttgatgttatgtgtgcaag |
45464013 |
T |
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| Q |
116 |
taagattaaagattagatcaacgactgataatacattcgcgccaaatattaaagatccaacggttatcatagtttggcgccta |
198 |
Q |
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| T |
45464012 |
taagattaaagattagatcaagggctgataatacattcgcgccaaagattaaagatccaacggttatcatagtttggcgccta |
45463930 |
T |
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Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 49 - 199
Target Start/End: Complemental strand, 19462036 - 19461886
Alignment:
| Q |
49 |
tgcattaagcgtcataaacgcatgcgaggaaatgggtatttgaattccttgatgttatgtgtgcaagtaagattaaagattagatcaacgactgataata |
148 |
Q |
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| T |
19462036 |
tgcatcaagtgtcataaacgcatggagggaaatgagtatttgaattccttcatgttatgtgtgcaagccagattaaagattagatcaagggctgataata |
19461937 |
T |
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| Q |
149 |
cattcgcgccaaatattaaagatccaacggttatcatagtttggcgcctaa |
199 |
Q |
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| T |
19461936 |
catcctcaccaaatgttaaagatccaacagttatcatagtttggtgcctaa |
19461886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 199
Target Start/End: Original strand, 38611813 - 38611987
Alignment:
| Q |
24 |
aacgcgtgggtgaaaaattcgaatttgcattaagcgtcataaacgcatgcgaggaaatgggtatttgaattccttgat-gttatgtgtgcaagtaagatt |
122 |
Q |
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| T |
38611813 |
aacgcatgagtgaaaaattcaactctgcattaagtgtcataaacgcatggg--gaaatgagtatttgaattccttgattgtaatgtgtgcaagtcagatt |
38611910 |
T |
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| Q |
123 |
aaagattagatcaacgactgataatacattcgcgccaaatattaaagatccaacggttatcatagtttggcgcctaa |
199 |
Q |
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| T |
38611911 |
aaagattagatcaagggctgataatacatctgcaccaaaggttaaagatccaacatttatcatagtttgacgcctaa |
38611987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 35858298 - 35858124
Alignment:
| Q |
19 |
tcataaacgcgtgggtgaaaaattcgaatttgcattaagcgtcataaacgcatgcgaggaaatgggtatttgaattccttgatgttatgtgtgcaagtaa |
118 |
Q |
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|||||||||| |||| |||||||| | ||||||||| |||||||||||||| | |||||| ||||||||||||||| |||||||||||||||| |
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| T |
35858298 |
tcataaacgcatggggtaaaaattcaacggtgcattaagtgtcataaacgcatggg--gaaatgagtatttgaattccttaatgttatgtgtgcaagccg |
35858201 |
T |
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| Q |
119 |
gattaaagattagatcaacgactgataatacattcgcgccaaatattaaagatccaacggttatcatagtttggcgc |
195 |
Q |
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| T |
35858200 |
gattaaagattagatgaagggctaataatacatccgcgccaaaggttaaagattcaacggttatcctagtttggcgc |
35858124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 47 - 199
Target Start/End: Complemental strand, 2953119 - 2952969
Alignment:
| Q |
47 |
tttgcattaagcgtcataaacgcatgcgaggaaatgggtatttgaattccttgatgttatgtgtgcaagtaagattaaagattagatcaacgactgataa |
146 |
Q |
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||||||||||| |||||||||||||| | |||||| |||||||||||||||||| | ||||||||||| ||||||||||||||||||| | | ||||| |
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| T |
2953119 |
tttgcattaagtgtcataaacgcatggg--gaaatgagtatttgaattccttgatctaatgtgtgcaagccagattaaagattagatcaagggcggataa |
2953022 |
T |
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| Q |
147 |
tacattcgcgccaaatattaaagatccaacggttatcatagtttggcgcctaa |
199 |
Q |
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||||| || ||||| |||| |||||||| ||||||||||||||||||||| |
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| T |
2953021 |
tacatctgcaccaaaggttaatgatccaacatttatcatagtttggcgcctaa |
2952969 |
T |
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