View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17539_high_37 (Length: 218)

Name: NF17539_high_37
Description: NF17539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17539_high_37
NF17539_high_37
[»] chr6 (4 HSPs)
chr6 (1-124)||(34754341-34754464)
chr6 (123-216)||(34754505-34754598)
chr6 (35-128)||(11538121-11538217)
chr6 (35-128)||(11563631-11563727)


Alignment Details
Target: chr6 (Bit Score: 124; Significance: 6e-64; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 34754341 - 34754464
Alignment:
Q  1 tgaatcttacctcttgttcttttctgctgctataacagtcaaggtatagactgctaattgctggtgaagatgatgagtcttctgatgaagaattgaatgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34754341 tgaatcttacctcttgttcttttctgctgctataacagtcaaggtatagactgctaattgctggtgaagatgatgagtcttctgatgaagaattgaatgg 34754440  T
Q  101 tgttttcatggatgaacacgacga 124  Q
    ||||||||||||||||||||||||    
T  34754441 tgttttcatggatgaacacgacga 34754464  T

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Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 123 - 216
Target Start/End: Original strand, 34754505 - 34754598
Alignment:
Q  123 gaggatgcaggagttctagctgacccggactacaatcctgatatggatgaaaatttcagtgatggtggcagcaacagcagcagtagtagtagta 216  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34754505 gaggatccaggagttctagctgacccggactacaatcctgatatggatgaaaatttcagtgatggtggcagcaacagcagcagtagtagtagta 34754598  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 128
Target Start/End: Original strand, 11538121 - 11538217
Alignment:
Q  35 acagtcaaggtatagactgctaattgctggtgaagatgatgagtcttctgatgaagaa----ttgaatggtgttttcatggatgaacacgacgaggat 128  Q
    |||||||||||||||| || | ||||| ||||||||| |||| ||||||||||| |||    ||||| || ||||| |||||||||||||||||||||    
T  11538121 acagtcaaggtatagattgttgattgccggtgaagataatgaatcttctgatgaggaattcgttgaa-ggcgtttttatggatgaacacgacgaggat 11538217  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 128
Target Start/End: Original strand, 11563631 - 11563727
Alignment:
Q  35 acagtcaaggtatagactgctaattgctggtgaagatgatgagtcttctgatgaagaa----ttgaatggtgttttcatggatgaacacgacgaggat 128  Q
    |||||||||||||||| || | ||||| ||||||||| |||| ||||||||||| |||    ||||| || ||||| |||||||||||||||||||||    
T  11563631 acagtcaaggtatagattgttgattgccggtgaagataatgaatcttctgatgaggaattcgttgaa-ggcgtttttatggatgaacacgacgaggat 11563727  T

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