View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17539_high_6 (Length: 472)
Name: NF17539_high_6
Description: NF17539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17539_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 4775844 - 4776302
Alignment:
| Q |
1 |
gaacccatattaactcttgagtagtggctgctatagtacgatattcagcttcagttgacgattttgcaacagttggctgcttcttgcatgaccaagagat |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
4775844 |
gaacccatattaattcttgagtagtggctgctatagtacgatattcagcttcagttgacgattttgcaattgttggttgcttcttgcatgaccaagagat |
4775943 |
T |
|
| Q |
101 |
aatattagggccaaaataaattaaataagcacctgtcgatttccgatcaattgtgtctccagcccaatctgcatcacaaaagcttgtgaggcttgtattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||| |||||||||||||||||||||||||| |||||||| |
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| T |
4775944 |
aatattagggccaaaataaattaaataagcacctgttgatttcctgtcaattgtgtctcctgcctaatctgcatcacaaaagcttgtgaggtttgtattt |
4776043 |
T |
|
| Q |
201 |
gaagatctcgtgagatggagtccattggagatggtggatttgagatagcgcaatactctatttaaggcttgcatatctgtcacagtaggagcttgcattt |
300 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
4776044 |
gaagatcttgtgagatggagtccattggagatggtggatttgagatagcgcaatactctcttcaaggcttgcatatctgtcacagtaggagcttgcattt |
4776143 |
T |
|
| Q |
301 |
gttgtgctagtttattcaccgggaatgctatgtccgggcgtgtgattgaaaggtaatgtaaggcaccaagtatactgcgaaattccttactatcacagta |
400 |
Q |
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||| ||||||||||||||| || ||||| ||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
4776144 |
gttatgctagtttattcactggaaatgcaatgtctgggcgagtgattgaaaggtagtgtaaggcaccaagcatactgcgaaattccttactgtcacagta |
4776243 |
T |
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| Q |
401 |
tgtggagtcaggtttaggttgtgagcagaatgaggtggccatgggagtagacacaggtt |
459 |
Q |
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| T |
4776244 |
tgtggagtcgggtttaggttgtgagcagaatgaggtggccatgggagtagacacaggtt |
4776302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 43061205 - 43061400
Alignment:
| Q |
1 |
gaacccatattaactcttgagtagtggctgctatagtacgatattcagcttcagttgacgattttgcaacagttggctgcttcttgcatgaccaagagat |
100 |
Q |
| |
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||||||||||||| || |||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43061205 |
gaacccatattaattcctgagtagtggctgctatagtccgatattcagcttcagttgatgattttgcaactgttggctgcttcttgcatgaccaagagat |
43061304 |
T |
|
| Q |
101 |
aatattagggccaaaataaattaaataagcacctgtcgatttccgatcaattgtgtctccagcccaatctgcatcacaaaagcttgtgaggcttgt |
196 |
Q |
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| T |
43061305 |
aatattagggccaaaataaatgaaataagcacctgttcatatcctgtcaattgtgtctcctgcccaatctgcatcacaaaagtttgtgaggcttgt |
43061400 |
T |
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