View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17539_low_11 (Length: 423)
Name: NF17539_low_11
Description: NF17539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17539_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 396
Target Start/End: Original strand, 40259375 - 40259760
Alignment:
| Q |
18 |
gtgagcagtataatccaaatcggaaagtttaagtcacttacagctgattgttctggggaaaatcagggagagattgtacaagatatggtggaatagtact |
117 |
Q |
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| T |
40259375 |
gtgagccgtataatccaaatcggaaagtttaagtcacttacagctgattgttctggggaaaatcagggagagattgtacaagatatggtggaatagtact |
40259474 |
T |
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| Q |
118 |
aggccagtaactatcacagacattagacaacttttaaacataacaataaggaa----tatgtatgtatgtatgcataaacttgaatgaaggcatggtttt |
213 |
Q |
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| T |
40259475 |
aggccagtaactatcacagacattagacaacttttaaacataacaataaggaatatgtatgtatgtatgtatgcataaacttgaatgaaggcatggtttc |
40259574 |
T |
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| Q |
214 |
ca-tttctttcagtctatgccagaaattaaatatataggactagttaaagttatcatattattattattttggaatagaacaataaatttgtaatagtgg |
312 |
Q |
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| T |
40259575 |
cattttctttcagtctatgtcagaaattacatatatagtagtagttaaagttatcatattattattattttggaatagaacaataaatttgtaatagtgg |
40259674 |
T |
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| Q |
313 |
aaaggaatggtggagagaaatttacattaaatccaatgttatcgatctaggaccgcagaaaatagt--tttgttcaaattcctata |
396 |
Q |
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| T |
40259675 |
aaaggaatggtggagagaaatttacattaaatccaatgttatcgatctaggaccgcagaaaatagttgtttgttcaaattcctata |
40259760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 335 - 406
Target Start/End: Original strand, 40259759 - 40259830
Alignment:
| Q |
335 |
tacattaaatccaatgttatcgatctaggaccgcagaaaatagttttgttcaaattcctatagcgccactat |
406 |
Q |
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| T |
40259759 |
tacattaaatccaatgttatcgatctaggaccgcaaaaaatagttttgttcaaattcctatagcgccactat |
40259830 |
T |
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