View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17539_low_13 (Length: 395)
Name: NF17539_low_13
Description: NF17539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17539_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 9457110 - 9456960
Alignment:
| Q |
19 |
catccatcatcatctgttccnnnnnnntctttgtatagatcaagtttcttatgtaacttaataggaatgcactggcatgcacgttgtttagactcagtat |
118 |
Q |
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| T |
9457110 |
catccatcatcatctgttccaaaaaa-tctttgtatagatcaagtttcttatgtaacttaataggaatgcactggcatgcacgttgtttagactcagtat |
9457012 |
T |
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| Q |
119 |
tcagtattctcagagacacttactacatcccataatagttacacgatcctac |
170 |
Q |
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| T |
9457011 |
tcagtattctcagagacacttactacatcccataatagttacacgatcctac |
9456960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 256 - 372
Target Start/End: Complemental strand, 9456874 - 9456758
Alignment:
| Q |
256 |
cctacatattcaactcatttttcggttgcgacatgcttactaaagttcaacaacagtgacatattagctgagcctccagcaaatctctgatcagctaccc |
355 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9456874 |
cctacatattcgactcatttttcggttgcaacatgcttactaaagttcaacaacagtgacatattagctgagcctccagcaaatctctgatcagctaccc |
9456775 |
T |
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| Q |
356 |
catctcagtgtcatgta |
372 |
Q |
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| T |
9456774 |
catctcagtgtcatgta |
9456758 |
T |
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