View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17539_low_14 (Length: 377)
Name: NF17539_low_14
Description: NF17539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17539_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 25588653 - 25588304
Alignment:
| Q |
18 |
ataattatatatactaaaaatgtctaattgtattggactgcaccaaacatcaatattaagtgctatctttttacccaagagttgaatgtacttgtatagc |
117 |
Q |
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| T |
25588653 |
ataattatatacactaaaaatgtctaattgtattggactgcaccaaacatcaatattaagtgctatctttttacccaagagttgaatgtacttgtatagc |
25588554 |
T |
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| Q |
118 |
acattctagagccaaaccagtttagagttatgaaatttttcaaaacccaaaccagtttaaagcatcaagataaacataatattcatcataaacatgtctt |
217 |
Q |
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| T |
25588553 |
acattctagagccaaaccagttttgagttatgaaatttttcaaaacccaaaccagtttaaagcatcaagataaacataatattcatcataaacatgtctt |
25588454 |
T |
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| Q |
218 |
tatcaaagcaattcataccattaaaatattagaaacatttaatttatttatttagtggtaattttaataatagtagttgaaagtggaggttggctgcata |
317 |
Q |
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| T |
25588453 |
tatcaaagcgattcataccattaaaatattagaaacatttaatttatttatttaatggtaattttaataatagtagttgaaagtggaggttatctgcata |
25588354 |
T |
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| Q |
318 |
cagcttttagagtggtgatcgacggtggccagagtagtggtttgatgatg |
367 |
Q |
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| T |
25588353 |
cggcttttagagtggtgatcgacggtggccagagtagtggtttgatgatg |
25588304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 309
Target Start/End: Original strand, 37465131 - 37465183
Alignment:
| Q |
257 |
taatttatttatttagtggtaattttaataatagtagttgaaagtggaggttg |
309 |
Q |
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| T |
37465131 |
taatgtatttatttagtagtaattttaataatagtggtagaaagtggtggttg |
37465183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 15850891 - 15850960
Alignment:
| Q |
166 |
aaaccagtttaaagcatcaagataaacataa-tattcatcataaacatgtctttatcaaagcaattcata |
234 |
Q |
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|||||||||| |||||| |||||||| |||| ||||||||| ||||||||||| ||| || ||| ||||| |
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| T |
15850891 |
aaaccagtttcaagcataaagataaatataaatattcatcagaaacatgtcttaatccaaacaactcata |
15850960 |
T |
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