View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17539_low_15 (Length: 368)
Name: NF17539_low_15
Description: NF17539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17539_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 7 - 350
Target Start/End: Original strand, 13911897 - 13912240
Alignment:
| Q |
7 |
tagattattctgtcctattttgtccctttcattttctatgatatgaatcttcccctagataggtgattcagtgttttgttttcaaaatcttgctagtatc |
106 |
Q |
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| T |
13911897 |
tagattattctgtcctattttgtccctttcattttctatgatatgaatcttcccctagataggtgattcagtgttttgttttcaaaatcttgctagtatc |
13911996 |
T |
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| Q |
107 |
acgagcacgtgatttacatttgtaccctagtacaaatattcatttctctatcaatatatagttatttctaattaatattttaaaaaatacaaatatgtat |
206 |
Q |
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| T |
13911997 |
acgagcacgtgatttacatttgtaccctagtacaaatattcatttctctatcaatatatagttatttctaattaatattttaaaaaatacaaatatgtat |
13912096 |
T |
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| Q |
207 |
atagttgctatagctatatatattggtaccaatacctttaagacattagggttgacttaattggtttatatgatggtgcagaatccacctcgaccaaaca |
306 |
Q |
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| T |
13912097 |
atagttgctatagctatatatattggtaccaatacctttaagacattagggttgacttaattggtttatatgatggtgcagaatccacctcgaccaaaca |
13912196 |
T |
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| Q |
307 |
catatatgccatttggaaatggagtccactcttgtcctggtagt |
350 |
Q |
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| T |
13912197 |
catatatgccatttggaaatggagtccactcttgtcctggtagt |
13912240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 199 - 350
Target Start/End: Complemental strand, 14320652 - 14320507
Alignment:
| Q |
199 |
atatgtatatagttgctatagctatatatattggtaccaatacctttaagacattagggttgacttaattggtttatatgatggtgcagaatccacctcg |
298 |
Q |
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| T |
14320652 |
atatgtatatagttgctatagctatttatatt------aataccattaagacattagggttgacttaattggtttatatgatggtgcagaatccacctcg |
14320559 |
T |
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| Q |
299 |
accaaacacatatatgccatttggaaatggagtccactcttgtcctggtagt |
350 |
Q |
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| T |
14320558 |
accaaacacatatatgccatttggaaatggagtccactcttgtcctggtagt |
14320507 |
T |
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