View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17539_low_16 (Length: 361)
Name: NF17539_low_16
Description: NF17539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17539_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 40178499 - 40178567
Alignment:
| Q |
50 |
aagaatgccaagaactgcaaccatacatttgtttcttcgcgatcttgtatcaatggatgagtaagagta |
118 |
Q |
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| T |
40178499 |
aagaatgccaagaactgcaaccataaatttgtttcttcgcgatcttgtatcaatggatgagtaagagta |
40178567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 41536371 - 41536327
Alignment:
| Q |
62 |
aactgcaaccatacatttgtttcttcgcgatcttgtatcaatgga |
106 |
Q |
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| T |
41536371 |
aactgcaaccatacctttctctcttcgcgatcttgtatcaatgga |
41536327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 361
Target Start/End: Complemental strand, 41620176 - 41620131
Alignment:
| Q |
316 |
ataaaaaccagtacgaaaaccaatttgatttgtgaactttcatagt |
361 |
Q |
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| T |
41620176 |
ataaaaacaagtagtaaaaccagtttgatttgtgaactttcatagt |
41620131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 325
Target Start/End: Original strand, 40179218 - 40179246
Alignment:
| Q |
297 |
tagcgaaaacttccttctgataaaaacca |
325 |
Q |
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| T |
40179218 |
tagcgaaaacttccttctgataaaaacca |
40179246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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