View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17539_low_17 (Length: 351)
Name: NF17539_low_17
Description: NF17539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17539_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 13 - 335
Target Start/End: Complemental strand, 52600894 - 52600572
Alignment:
| Q |
13 |
gagaaggcgaacaagatttttatgctggatacttgtgatcattctcacttctgctagaaattctctttctccttggtgagatttgtcaagagacaatttc |
112 |
Q |
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| T |
52600894 |
gagaaggcgaacaagatttttatgctggatgcttgtgatcattctcacttctgctagaaattctctttctccttggtgagatttgtcaagagacaatttc |
52600795 |
T |
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| Q |
113 |
ttacaagcaactagccttccatctgccaactttccctgtcaaaacacaagtagtcctcaataagtaagtgaatttatatgagccacaattaccaaaggta |
212 |
Q |
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| T |
52600794 |
ttacaagcaactagccttccatctgccaactttccctgtcaaaacacaagtagtcctcaataagtaagtgaatttatatgagccacaattaccaaaggta |
52600695 |
T |
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| Q |
213 |
gaaaactcaatttgatattatgtaatataatagtaacattggtgcatcatgattaagactttaagaattcaggttatcattgtcaggtcaaaattgtgta |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52600694 |
gaaaactcaatttgatattatgtaatataatagtaacattggtgcatcatgattaagactttaagaattcaggttctcattgtcaggtcaaaattgtgta |
52600595 |
T |
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| Q |
313 |
tcaaagtaagtatcattagattt |
335 |
Q |
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||||||||||||||||||||||| |
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| T |
52600594 |
tcaaagtaagtatcattagattt |
52600572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 16912334 - 16912478
Alignment:
| Q |
14 |
agaaggcgaacaagatttttatgctggatacttgtgatcattctcacttctgctagaaattctctttctccttggtgagatttgtcaagagacaatttct |
113 |
Q |
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||||||||||| | |||||| || |||||||||||||||| | | || || || | |||||||||||||||||| |||||||||| |||||| ||| || |
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| T |
16912334 |
agaaggcgaaccaaatttttgtgttggatacttgtgatcaatttaacctcagccaaaaattctctttctccttgttgagatttgttaagagataatgcct |
16912433 |
T |
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| Q |
114 |
tacaagcaactagccttccatctgccaactttccctgtcaaaaca |
158 |
Q |
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| T |
16912434 |
taacagcaatgatccttccatcttccaactttccctatcaaaaca |
16912478 |
T |
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