View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17539_low_18 (Length: 350)
Name: NF17539_low_18
Description: NF17539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17539_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 67 - 338
Target Start/End: Original strand, 41620217 - 41620488
Alignment:
| Q |
67 |
ttcgataaacatacttgcttgtttcttactcctttgtcttctcttgaaagttggaaaagttgttttagattctcattgaaacagtacatctttcacatca |
166 |
Q |
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| T |
41620217 |
ttcgataaacatacttgcttgtttcttactcctttgtcttctcttgaaagttggaaaagttgttttagattctcaatgaaacagtacctctttcacatca |
41620316 |
T |
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| Q |
167 |
ttttctacttatcattttgattctctttaggctaatttctttactacttcaccattgtcatacatagttacatactttgtattagaattcaaaagttcta |
266 |
Q |
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| T |
41620317 |
ttttctacttatcattttgattctctttaggctaatttttttactacttaaccattgtcatacatagttacatactttgtattagaattcaaaagttcta |
41620416 |
T |
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| Q |
267 |
agaagcatgaagttgaatcaatcaatgagattatcagtttctctctagttgcaataagaagctagtaagaat |
338 |
Q |
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| T |
41620417 |
agaagcatgaagttgaatcaatcaatgagattatcagtttctctctagttgcaataagaagctagtaagaat |
41620488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 41620180 - 41620218
Alignment:
| Q |
1 |
atgggaatttttgttttctctgtttctgctaatcccatt |
39 |
Q |
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| T |
41620180 |
atgggaatttttgttttctctgtttctgctaatcccatt |
41620218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 9126357 - 9126404
Alignment:
| Q |
80 |
cttgcttgtttcttactcctttgtcttctcttgaaagttggaaaagttg |
128 |
Q |
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| T |
9126357 |
cttgcttgtttcttactc-tttgtcttctctctaaagttggaaaagttg |
9126404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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