View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17539_low_19 (Length: 336)
Name: NF17539_low_19
Description: NF17539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17539_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 15 - 318
Target Start/End: Complemental strand, 52832599 - 52832296
Alignment:
| Q |
15 |
cacagaaacagaggaaactccgaattttattgtccactttccttacattgttaaacaaaggtcacatgtaacatcgccacacttgttacttcttttccct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| | |||| ||||||||||||||||||| |
|
|
| T |
52832599 |
cacagaaacagaggaaactccgaattttattgtccactttccctacattgttaaacaaaggtcgcatgtaacaccaccacccttgttacttcttttccct |
52832500 |
T |
|
| Q |
115 |
ttttgcacccatttatgattgattatacacccttctcttgtagcagaaattaaagaacccaactcctccacattgtagtaacatacattttcggaatggc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52832499 |
ttttgcacccatttatgattgattatacacccttctcttgtagcagaaattaaagaacccaactcctccacattgtagtaacatacattttcggaatggc |
52832400 |
T |
|
| Q |
215 |
gaggaaaaattattcaccatcttcatctgcattgcgttatgttcaacctcgttattacgcaaaaagacccaaacgttttgcatttctcattttcctttta |
314 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52832399 |
gaggaaaaattattcatcatcttcatctgcattgcgttatgttcaacctcgttattacgcaaaaagacccaaacgttttgcatttctcattttcctttta |
52832300 |
T |
|
| Q |
315 |
atct |
318 |
Q |
| |
|
|||| |
|
|
| T |
52832299 |
atct |
52832296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University