View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17539_low_2 (Length: 735)

Name: NF17539_low_2
Description: NF17539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17539_low_2
NF17539_low_2
[»] chr7 (8 HSPs)
chr7 (8-722)||(41562411-41563126)
chr7 (305-400)||(46657038-46657133)
chr7 (130-199)||(46657195-46657264)
chr7 (404-591)||(41511369-41511556)
chr7 (475-563)||(48532739-48532827)
chr7 (478-517)||(16490924-16490963)
chr7 (250-289)||(46657134-46657173)
chr7 (478-516)||(48398546-48398584)
[»] chr5 (2 HSPs)
chr5 (469-528)||(32075089-32075148)
chr5 (468-557)||(20155209-20155298)
[»] chr4 (1 HSPs)
chr4 (464-528)||(8136517-8136581)
[»] chr8 (2 HSPs)
chr8 (475-518)||(33005114-33005157)
chr8 (475-517)||(3770202-3770244)
[»] chr6 (2 HSPs)
chr6 (475-517)||(845018-845060)
chr6 (475-517)||(870302-870344)


Alignment Details
Target: chr7 (Bit Score: 674; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 8 - 722
Target Start/End: Complemental strand, 41563126 - 41562411
Alignment:
Q  8 gacatcatcattaaagacttatttgtcactttaaatttgtaaagtcaagtcttttataaattagtctctgatgacataatctattgtcacaatagaacta 107  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  41563126 gacatcatcattaaagacttatgtgtcactttaaatttgtaaagtcaagtcttttataaattagtctctgatgacataatctattgtcacaatagaactt 41563027  T
Q  108 ttttggtatgcttaatcattgattatgaacttttctctacaatttct--tgtataaacaatttgcaatttgaatcagaagatccaccatcttcaacagcc 205  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41563026 ttttggtatgcttaat-attgattatgaacttttctctacaatttctcttgtataaacaatttgcaatttgaatcagaagatccaccatcttcaacagcc 41562928  T
Q  206 ttataagccatatcttttatctctttagctttgtttcttctctgttctccttccacaccattctccataagattttcaatagccctcttcacatcctctt 305  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41562927 ttataagccatatcttttatctcttttgctttgtttcttctctgttctccttccacaccattctccataagattttcaatagccctcttcacatcctctt 41562828  T
Q  306 tcttcaccaacactttctcacctttatatgtctccattggatcaacaaaagcctcaacaccaatcctcacaccaatcttaagcacttgcacaatcaactt 405  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41562827 tcttcaccaacactttctcacctttatatatctccattggatcaacaaaagcctcaacaccaatcctcacaccaatcttaagcacttgcacaatcaactt 41562728  T
Q  406 ctcattaaagaattgttcagcaaacattggccaagttatcattggtacaccgcttgaaattgcttccattgttgaattccaaccacaatgagataaaaat 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41562727 ctcattaaagaattgttcagcaaacattggccaagttatcattggtacaccacttgaaattgcttccattgttgaattccaaccacaatgagataaaaat 41562628  T
Q  506 ccaccagttgaaggatgtgacaatatttcaacttgtggagcccatcctttaactataactccttttcctttagtcctctcttcaaaattctcttctttta 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41562627 ccaccagttgaaggatgtgacaatatttcaacttgtggagcccatcctttaactataactccttttcctttagtcctctcttcaaaattctcttctttta 41562528  T
Q  606 accacttctctaattcaatagaacaatcattttttccaatcacccaaatgaatggatggtttgatgcttccaatcctaaagcaagttcctttagctgtga 705  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41562527 accacttctctaattcaatagaacaatcattttttccaatcacccaaatgaatggatggtttgatgcttccaatcctaaagcaagttcctttagttgtga 41562428  T
Q  706 agtaggaatgaaagata 722  Q
    |||||||||||||||||    
T  41562427 agtaggaatgaaagata 41562411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 305 - 400
Target Start/End: Complemental strand, 46657133 - 46657038
Alignment:
Q  305 ttcttcaccaacactttctcacctttatatgtctccattggatcaacaaaagcctcaacaccaatcctcacaccaatcttaagcacttgcacaatc 400  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||    
T  46657133 ttcttcaccaacactttctcacctttaaatatctccattggatcaacaacagcttcaacaccaatcctcacaccaatcttaagaacttgcacaatc 46657038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 46657264 - 46657195
Alignment:
Q  130 ttatgaacttttctctacaatttcttgtataaacaatttgcaatttgaatcagaagatccaccatcttca 199  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46657264 ttatgagctttgctctacaatttcttgtataaacaatttgcaatttgaatcagaagatccaccatcttca 46657195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 404 - 591
Target Start/End: Complemental strand, 41511556 - 41511369
Alignment:
Q  404 ttctcattaaagaattgttcagcaaacattggccaagttatcattggtacaccgcttgaaattgcttccattgttgaattccaaccacaatgagataaaa 503  Q
    |||||||| || ||||| |||||||| | ||||||||||| ||||||||||||       ||  |||| | |||||||||||||||||||||||  ||||    
T  41511556 ttctcattcaaaaattggtcagcaaataatggccaagttaccattggtacaccaaaacttatcccttcaagtgttgaattccaaccacaatgagtcaaaa 41511457  T
Q  504 atccaccagttgaaggatgtgacaatatttcaacttgtggagcccatcctttaactataactccttttcctttagtcctctcttcaaa 591  Q
    |||||||| |||||| |||||| |||||  | | |||||| ||||| ||| ||| ||||| |||| | |||||| |||| || |||||    
T  41511456 atccaccaattgaagaatgtgataatatcaccatttgtggggcccaccctctaattataagtcctctccctttattcctttcctcaaa 41511369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 475 - 563
Target Start/End: Complemental strand, 48532827 - 48532739
Alignment:
Q  475 tgttgaattccaaccacaatgagataaaaatccaccagttgaaggatgtgacaatatttcaacttgtggagcccatcctttaactataa 563  Q
    |||||||||||| |||||||| | ||| ||||| ||| ||||||| ||||| ||||||   |||||||||||||| ||| ||| |||||    
T  48532827 tgttgaattccatccacaatgtgttaagaatcctccaattgaagggtgtgataatattagcacttgtggagcccaacctctaattataa 48532739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 478 - 517
Target Start/End: Complemental strand, 16490963 - 16490924
Alignment:
Q  478 tgaattccaaccacaatgagataaaaatccaccagttgaa 517  Q
    ||||||||||||||| ||||||||||| ||||||||||||    
T  16490963 tgaattccaaccacagtgagataaaaacccaccagttgaa 16490924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 289
Target Start/End: Complemental strand, 46657173 - 46657134
Alignment:
Q  250 ttctccttccacaccattctccataagattttcaatagcc 289  Q
    ||||||||||||||||||| ||||||| ||||||||||||    
T  46657173 ttctccttccacaccattcaccataagcttttcaatagcc 46657134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 478 - 516
Target Start/End: Complemental strand, 48398584 - 48398546
Alignment:
Q  478 tgaattccaaccacaatgagataaaaatccaccagttga 516  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  48398584 tgaattccaaccacaatgagttaaaaacccaccagttga 48398546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 469 - 528
Target Start/End: Original strand, 32075089 - 32075148
Alignment:
Q  469 ttccattgttgaattccaaccacaatgagataaaaatccaccagttgaaggatgtgacaa 528  Q
    |||| |||||||||||||||||||||||||  ||||||||||| | ||||||||||||||    
T  32075089 ttcctttgttgaattccaaccacaatgagaccaaaatccaccaatagaaggatgtgacaa 32075148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 557
Target Start/End: Complemental strand, 20155298 - 20155209
Alignment:
Q  468 cttccattgttgaattccaaccacaatgagataaaaatccaccagttgaaggatgtgacaatatttcaacttgtggagcccatcctttaa 557  Q
    |||| |||||||||||||| |||||||| |  || ||||| ||| |||||||||| || | ||||  || |||||| |||||||||||||    
T  20155298 cttcaattgttgaattccatccacaatgtgtcaagaatcctccaattgaaggatgagaaagtattaaaatttgtggtgcccatcctttaa 20155209  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 464 - 528
Target Start/End: Original strand, 8136517 - 8136581
Alignment:
Q  464 attgcttccattgttgaattccaaccacaatgagataaaaatccaccagttgaaggatgtgacaa 528  Q
    |||||||||||||| ||||||||||||||||| | ||| ||||| ||| ||| ||||||||||||    
T  8136517 attgcttccattgtagaattccaaccacaatgtgttaagaatcctccaattgcaggatgtgacaa 8136581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 475 - 518
Target Start/End: Original strand, 33005114 - 33005157
Alignment:
Q  475 tgttgaattccaaccacaatgagataaaaatccaccagttgaag 518  Q
    ||||||||||||||||||||| | ||||||||||||||||||||    
T  33005114 tgttgaattccaaccacaatgtgttaaaaatccaccagttgaag 33005157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 475 - 517
Target Start/End: Original strand, 3770202 - 3770244
Alignment:
Q  475 tgttgaattccaaccacaatgagataaaaatccaccagttgaa 517  Q
    ||||||||||||||||||||| | |||||||||||| ||||||    
T  3770202 tgttgaattccaaccacaatgtgttaaaaatccacctgttgaa 3770244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 475 - 517
Target Start/End: Original strand, 845018 - 845060
Alignment:
Q  475 tgttgaattccaaccacaatgagataaaaatccaccagttgaa 517  Q
    ||||||||||||||||||||||| |||||| |||||| |||||    
T  845018 tgttgaattccaaccacaatgagttaaaaacccaccaattgaa 845060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 475 - 517
Target Start/End: Original strand, 870302 - 870344
Alignment:
Q  475 tgttgaattccaaccacaatgagataaaaatccaccagttgaa 517  Q
    ||||||||||||||||||||||| |||||| |||||| |||||    
T  870302 tgttgaattccaaccacaatgagttaaaaacccaccaattgaa 870344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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