View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17539_low_20 (Length: 336)
Name: NF17539_low_20
Description: NF17539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17539_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 26508822 - 26508514
Alignment:
| Q |
18 |
gttacacaggcacattggtcaaaaaatgcatggacatggaccttaatatcagaacctttcctgatataggtcaacatgcatttggatcaaaagggagatt |
117 |
Q |
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| T |
26508822 |
gttacacaggcacattggtcaaaaaatgcatggacatggaccttaatatcagaacctttccagacataggtcaacatgcatttggatcaaaagggagatt |
26508723 |
T |
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| Q |
118 |
aatggtatcaatcatcatgaattctgagctctatcttgctgtaacaggttttcttattttagaaggagacaaccttaacaaacttgtaccgaacgtgcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26508722 |
aatggtatcaatcatcatgaattctgagctctatcttgctgtaacaggttttcttattttagaaggagacaaccttaacaaacttgtaccgaacgtgcaa |
26508623 |
T |
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| Q |
218 |
attcacctagcaggattaacaattggtggcacaacaatgtttactatggttactgctcttgttattttgcctactgttttgttagaggacatgagtttgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26508622 |
attcacctagcaggattaacaattggtggcacaacaatgtttactatggttactgctcttgttattttgcctactgttttgttagaggacatgagtttgt |
26508523 |
T |
|
| Q |
318 |
tgtcctatg |
326 |
Q |
| |
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|||| |||| |
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| T |
26508522 |
tgtcttatg |
26508514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 26481729 - 26481421
Alignment:
| Q |
18 |
gttacacaggcacattggtcaaaaaatgcatggacatggaccttaatatcagaacctttcctgatataggtcaacatgcatttggatcaaaagggagatt |
117 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||| |||||||| ||| ||| |||| ||||||||||||||||||||||| ||||||||||| |
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| T |
26481729 |
gttatacaggcacattggtaaaaaaatgcatggacatggaccctaatatcaaaacatttgctgacataggtcaacatgcatttggatccaaagggagatt |
26481630 |
T |
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| Q |
118 |
aatggtatcaatcatcatgaattctgagctctatcttgctgtaacaggttttcttattttagaaggagacaaccttaacaaacttgtaccgaacgtgcaa |
217 |
Q |
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||| || ||||||||||||||| ||| || ||||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||| || || |
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| T |
26481629 |
aatagtttcaatcatcatgaatgttgaactttatctagctgtaacaggttttcttattttagaaggagacaatctaaacaaactagtaccaaattcagaa |
26481530 |
T |
|
| Q |
218 |
attcacctagcaggattaacaattggtggcacaacaatgtttactatggttactgctcttgttattttgcctactgttttgttagaggacatgagtttgt |
317 |
Q |
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|| ||| ||||| ||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26481529 |
atccacatagcaaatataacaattggtggaacaacaatgtttactatggtcgctggtcttgttattttgcctactgttttgttagaggatttgagtttgt |
26481430 |
T |
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| Q |
318 |
tgtcctatg |
326 |
Q |
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|||| |||| |
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| T |
26481429 |
tgtcttatg |
26481421 |
T |
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