View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17539_low_21 (Length: 331)
Name: NF17539_low_21
Description: NF17539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17539_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 3217876 - 3217568
Alignment:
| Q |
19 |
atttctctcttctctaataccaattaagcacacatggttgtttgatagtgcgtataataagtgtcagttgtgcattgttgaggacttctccatctgaaat |
118 |
Q |
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| T |
3217876 |
atttctctcttctctaataccaattaagcacacatgcttgtttgatagtgcgtataataagtgtcagttgtgtattgttgaggacttctccatctgaaat |
3217777 |
T |
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| Q |
119 |
gaaatataagtaaaaatagtttatagtatttagaataaaatatgagcaaaagttaaagacttctcttatattgaatgatagtacttctaaattatacctc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3217776 |
gaaatataagtaaaaatagtttatagtatttagaataaaatatgagcaaaagttaaagacttctcttatattgaatgatagtacttctaaattatacctc |
3217677 |
T |
|
| Q |
219 |
agtttatttaattaacttatcatatttaatcatttttgcttctaaattcccttaatcttcagtaattccctatgtacgattatcatttacacacatgcct |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3217676 |
agtttatttaattaacttatcatatttaatcatttttgcttctaatttcccttaatcttcagtaattccctatgtacgattatcattaacacacatgccc |
3217577 |
T |
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| Q |
319 |
atgcttctc |
327 |
Q |
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||| ||||| |
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| T |
3217576 |
atgattctc |
3217568 |
T |
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