View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17539_low_22 (Length: 321)

Name: NF17539_low_22
Description: NF17539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17539_low_22
NF17539_low_22
[»] chr7 (1 HSPs)
chr7 (13-305)||(46289298-46289590)


Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 305
Target Start/End: Original strand, 46289298 - 46289590
Alignment:
Q  13 cagaggtggcagaactgagaacagtgaactggttagaaatagaaggcagaattagaacgaagattctaacgccaaacacatcatatgcagcatatctcgt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46289298 cagaggtggcagaactgagaacagtgaactggttagaaatagaaggcagaattagaacgaagattctaacgccaaacacatcatatgcagcatatctcgt 46289397  T
Q  113 aatgaaaagctctcatagagcgtacggacttgactctactccttcagaagtttcaattgggataggaaacaaagtgaacagagcgaaagcatatttgtgc 212  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  46289398 aatgaaaagttctcatagagcgtacggacttgactctactcctacagaagtttcaattgtgataggaaacaaagtgaacagagggaaagcatatttgtgc 46289497  T
Q  213 attaaagatgagaacaaacgtaatatggagacactgttttacgggaacagaagaaacagagtgattcaagaacaagaagatggaggtaatatt 305  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46289498 attaaagatgagaacaaacgcaatatggagacactgttttacgggaacagaagaaacagagtgattcaagaacaagaagatggaggtaatatt 46289590  T

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