View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17539_low_24 (Length: 313)
Name: NF17539_low_24
Description: NF17539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17539_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 132 - 289
Target Start/End: Original strand, 33359416 - 33359572
Alignment:
| Q |
132 |
aatttggattatgaatgttccatatcttccctttctcaaataaccctattcaagatataaaatctggcttcctgaaaagnnnnnnnntccccnnnnnnnn |
231 |
Q |
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| T |
33359416 |
aatttggattatgaatgttccatatcttccctttctcaaatcaccctattcaagatataaaatctggcttcctgaaaagaaaaaaaatcccctttttttt |
33359515 |
T |
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| Q |
232 |
agtgaaaattcaaggagaaacgtgagnnnnnnnnattgaaaaatatctttggttttat |
289 |
Q |
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| T |
33359516 |
agtgaaaattcaaggagaaacgtgag-tttttttattgaaaaatatctttggttttat |
33359572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 33359334 - 33359421
Alignment:
| Q |
4 |
tatcagaagaaatcaaagagtttattccagatttgaaaatttaaagaatttactacagatgatatgtttaagaaataatctcaatttg |
91 |
Q |
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| T |
33359334 |
tatcagaagaaatcaaagagtttattccagatttgaaaattcaaagaatttactacaaaagatatgtttaataaataatctcaatttg |
33359421 |
T |
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