View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17539_low_25 (Length: 304)

Name: NF17539_low_25
Description: NF17539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17539_low_25
NF17539_low_25
[»] chr6 (26 HSPs)
chr6 (1-297)||(5352654-5352950)
chr6 (154-260)||(5439339-5439445)
chr6 (15-249)||(5242352-5242585)
chr6 (171-251)||(5100730-5100810)
chr6 (171-251)||(5135831-5135911)
chr6 (15-99)||(5177961-5178045)
chr6 (8-88)||(5180774-5180854)
chr6 (15-99)||(5279786-5279870)
chr6 (153-236)||(5398361-5398444)
chr6 (171-260)||(5351703-5351792)
chr6 (185-251)||(5255984-5256050)
chr6 (23-137)||(5427130-5427244)
chr6 (8-94)||(5100812-5100898)
chr6 (8-94)||(5135913-5135999)
chr6 (15-97)||(5688894-5688976)
chr6 (15-88)||(5346251-5346324)
chr6 (15-99)||(5098433-5098517)
chr6 (33-88)||(5283224-5283279)
chr6 (23-98)||(23127300-23127375)
chr6 (56-197)||(2939178-2939319)
chr6 (29-98)||(5065439-5065508)
chr6 (15-88)||(5398268-5398341)
chr6 (15-99)||(5126618-5126702)
chr6 (171-251)||(5180644-5180724)
chr6 (15-88)||(5256114-5256187)
chr6 (49-94)||(5372353-5372398)
[»] chr3 (4 HSPs)
chr3 (8-129)||(47985352-47985473)
chr3 (8-129)||(48003926-48004047)
chr3 (9-129)||(47994639-47994759)
chr3 (9-129)||(48013211-48013331)
[»] chr4 (3 HSPs)
chr4 (1-96)||(4122636-4122731)
chr4 (24-98)||(7884145-7884219)
chr4 (30-99)||(4132607-4132676)
[»] chr7 (1 HSPs)
chr7 (23-97)||(36212912-36212986)


Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 5352950 - 5352654
Alignment:
Q  1 tatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattggc 100  Q
    ||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5352950 tatggatcctggtgacaaagtagaggtggttattgttttcgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattgga 5352851  T
Q  101 aagactttggatttatatcatttaccagatttgaatgtacttccttctagtgatgatgaaaatgagcaccctgtcaagagattctctattgaagaggagc 200  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5352850 aagactttggatttatatcatttaccagatttgaatgtccttgcttctagtgatgatgaaaatgagcaccctgtcaagagattctctattgaagaggagc 5352751  T
Q  201 acactgaagatgtcaatcagaacagaaagaagaaaaatcgaatggaatgaaagatggtaagagtaatgactggagtttctagattttatctgtggtg 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5352750 acactgaagatgtcaatcagaacagaaagaagaaaaatcgaatggaatgaaagatggtaagagcaatgactggagtttctagattttatctgtggtg 5352654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 5439339 - 5439445
Alignment:
Q  154 tgatgaaaatgagcaccctgtcaagagattctctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaaatcgaatggaatgaaag 253  Q
    |||||||||||| | |||||  ||||||||||||| || |||||||| |||||| ||  |||||| |||||||||||||||||||||||||||||||||     
T  5439339 tgatgaaaatgaacgccctgctaagagattctctactggagaggagcccactgatgacttcaatcggaacagaaagaagaaaaatcgaatggaatgaaaa 5439438  T
Q  254 atggtaa 260  Q
    |||||||    
T  5439439 atggtaa 5439445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 15 - 249
Target Start/End: Complemental strand, 5242585 - 5242352
Alignment:
Q  15 acaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattggcaagactttggattt 114  Q
    ||||||| ||||| ||| |||||||||||||  ||||||| ||||||||||||  | ||||||| ||||||||| ||||||||||||  |    ||| ||    
T  5242585 acaaagtggaggtcgtttttgtttttgagaacagtttcattgtgaagaagacagtagtttatctcgtatatgatgaaccaattggcagaaaaaaggagtt 5242486  T
Q  115 atatcatttaccaga-tttgaatgtacttccttctagtgatgatgaaaatgagcaccctgtcaagagattctctattgaagaggagcacactgaagatgt 213  Q
    ||||||| | ||||| ||||||||   || ||| ||| | ||||||| |||| | | |||||||||||||||||| |||||||||||   |||| ||  |    
T  5242485 atatcatgtgccagattttgaatgacattacttatagaggtgatgaagatgaacgctctgtcaagagattctctactgaagaggagcctgctgatgactt 5242386  T
Q  214 caatcagaacagaaagaagaaaaatcgaatggaatg 249  Q
    |||||||||| |||  |||||||||||| |||||||    
T  5242385 caatcagaacggaa--aagaaaaatcgagtggaatg 5242352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 5100810 - 5100730
Alignment:
Q  171 ctgtcaagagattctctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaaatcgaatggaatgaa 251  Q
    |||||||||||||||||| ||||||||||| |||||| ||  ||||||||||||||||||||||||| ||| |||||||||    
T  5100810 ctgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaa 5100730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 5135911 - 5135831
Alignment:
Q  171 ctgtcaagagattctctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaaatcgaatggaatgaa 251  Q
    |||||||||||||||||| ||||||||||| || ||| ||  ||||||||||||||||||||||||| ||| |||||||||    
T  5135911 ctgtcaagagattctctactgaagaggagcccaatgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaa 5135831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 5177961 - 5178045
Alignment:
Q  15 acaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattgg 99  Q
    ||||||| ||||| |||||||||||||||||  ||||||| |||||||| |||||| ||||||| ||||||||| ||||||||||    
T  5177961 acaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaattgg 5178045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 5180854 - 5180774
Alignment:
Q  8 cccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgat 88  Q
    |||||| ||||||| ||||| ||| |||||||||||||  ||||||| |||||||||||| ||||||||||||||||||||    
T  5180854 cccggtaacaaagtggaggtcgtttttgtttttgagaaaagtttcattgtgaagaagacagcaatttatctggtatatgat 5180774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 5279786 - 5279870
Alignment:
Q  15 acaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattgg 99  Q
    ||||||| ||||| |||||||||||||||||  ||||||| |||||||| |||||| ||||||| ||||||||| ||||||||||    
T  5279786 acaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaattgg 5279870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 236
Target Start/End: Original strand, 5398361 - 5398444
Alignment:
Q  153 atgatgaaaatgagcaccctgtcaagagattctctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaa 236  Q
    ||||||||||||| | |||||||||||||||||||| |||||| |||| |||||| ||  |||||||||| |||||||||||||    
T  5398361 atgatgaaaatgaacgccctgtcaagagattctctactgaagatgagcccactgatgacttcaatcagaaaagaaagaagaaaa 5398444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 260
Target Start/End: Original strand, 5351703 - 5351792
Alignment:
Q  171 ctgtcaagagattctctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaaatcgaatggaatgaaagatggtaa 260  Q
    |||||||||||||||||| ||||||||||| |||||| ||  | |||||||||||||||||||||||  || |||| |||||||| ||||    
T  5351703 ctgtcaagagattctctactgaagaggagcccactgatgaccttaatcagaacagaaagaagaaaaactgagtggattgaaagatagtaa 5351792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 5256050 - 5255984
Alignment:
Q  185 tctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaaatcgaatggaatgaa 251  Q
    |||| ||||||||||| |||||| ||| ||||||||||||||||||||||||| ||| |||||||||    
T  5256050 tctactgaagaggagcccactgatgatttcaatcagaacagaaagaagaaaaaccgagtggaatgaa 5255984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 137
Target Start/End: Original strand, 5427130 - 5427244
Alignment:
Q  23 gaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattggcaagactttggatttatatcatt 122  Q
    ||||| ||| |||||||||||||  ||||| | |||| |||||||  | ||||||| ||||||||| ||||||||||||| |   |||| |||||||||     
T  5427130 gaggtcgtttttgtttttgagaacagtttcgttgtgacgaagacagtagtttatctcgtatatgatgaaccaattggcaaaaaaatggagttatatcatg 5427229  T
Q  123 taccagatttgaatg 137  Q
    |||||||||||||||    
T  5427230 taccagatttgaatg 5427244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 5100898 - 5100812
Alignment:
Q  8 cccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaacca 94  Q
    |||||| ||||||| ||||| |||||||||||||||||  ||||||| ||||| |||||| || ||||||| ||||| ||| |||||    
T  5100898 cccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatgaacca 5100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 5135999 - 5135913
Alignment:
Q  8 cccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaacca 94  Q
    |||||| ||||||| ||||| |||||||||||||||||  ||||||| ||||| |||||| || ||||||| ||||| ||| |||||    
T  5135999 cccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatgaacca 5135913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 5688976 - 5688894
Alignment:
Q  15 acaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaatt 97  Q
    ||||||| ||||| |||  ||||||||||||  ||||||| |||||||| |||||| ||||||| ||||||||| ||||||||    
T  5688976 acaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaatt 5688894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 5346251 - 5346324
Alignment:
Q  15 acaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgat 88  Q
    ||||||| ||||| || |||||| |||||||| ||||||| |||||||||||| ||||||||||  ||||||||    
T  5346251 acaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagcaatttatctcatatatgat 5346324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 5098433 - 5098517
Alignment:
Q  15 acaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattgg 99  Q
    ||||||| |||||  |||||||||| |||||  ||||||| ||||| |||||| || ||||||||||||||||| ||| ||||||    
T  5098433 acaaagtggaggtcattgttgttttcgagaacagtttcattgtgaaaaagacagcagtttatctggtatatgatgaacaaattgg 5098517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 5283279 - 5283224
Alignment:
Q  33 ttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgat 88  Q
    |||||||||| ||  ||||||| |||||||||||| ||||||||||||||||||||    
T  5283279 ttgtttttgaaaacagtttcattgtgaagaagacagcaatttatctggtatatgat 5283224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 23127375 - 23127300
Alignment:
Q  23 gaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattg 98  Q
    ||||| ||||| |||||||||||| ||||| | |||||||| |||||| ||||||| ||||||||| ||| |||||    
T  23127375 gaggttgttgtcgtttttgagaatggtttcgttgtgaagaatacaacagtttatcttgtatatgatgaactaattg 23127300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 197
Target Start/End: Original strand, 2939178 - 2939319
Alignment:
Q  56 gtgaagaagacaacaatttatctggtatatgataaaccaattggcaagactttggatttatatcatttaccagatttgaatgtacttccttctagtgatg 155  Q
    ||||||||| ||||||||||||| ||||||||| ||||| ||  ||  ||  |||| || |||||| | ||||||||||||| | || ||| |||| | |    
T  2939178 gtgaagaaggcaacaatttatctcgtatatgatgaaccagtttccagaacaatggagttgtatcatgttccagatttgaatgcaatttcttgtagtaacg 2939277  T
Q  156 atgaaaatgagcaccctgtcaagagattctctattgaagagg 197  Q
    |||||||||| | | || |||||||||| |||  ||||||||    
T  2939278 atgaaaatgaactctctatcaagagattatcttctgaagagg 2939319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 5065508 - 5065439
Alignment:
Q  29 gttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattg 98  Q
    |||||||||||||||||  ||||| | ||||||| ||||||| |||||||  |||||||| |||||||||    
T  5065508 gttgttgtttttgagaacggtttcgttgtgaagaggacaacagtttatctcatatatgatgaaccaattg 5065439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 5398268 - 5398341
Alignment:
Q  15 acaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgat 88  Q
    ||||||| ||||| ||  ||||||| ||||||  |||||| ||||||||||||||| ||||||| |||||||||    
T  5398268 acaaagttgaggttgtctttgttttcgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 5398341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 5126702 - 5126618
Alignment:
Q  15 acaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattgg 99  Q
    ||||||| ||| | |||||||||||| ||||  ||||||| |||||||||||| |  |||||||  |||||||| ||||||||||    
T  5126702 acaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagctgtttatctcatatatgatgaaccaattgg 5126618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 5180724 - 5180644
Alignment:
Q  171 ctgtcaagagattctctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaaatcgaatggaatgaa 251  Q
    |||| ||||||||||||  |||||| || ||| | || ||  ||||||||||||||||||||||||| ||| |||||||||    
T  5180724 ctgtgaagagattctctgctgaagacgaacacgccgacgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaa 5180644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 5256187 - 5256114
Alignment:
Q  15 acaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgat 88  Q
    ||||||| ||||| ||  |||||||  |||||  |||||| |||||||||||| |||||||| |||||||||||    
T  5256187 acaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttatttggtatatgat 5256114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 5372353 - 5372398
Alignment:
Q  49 tttcatcgtgaagaagacaacaatttatctggtatatgataaacca 94  Q
    |||||| ||||||||||||||||||||||| ||||| ||| |||||    
T  5372353 tttcattgtgaagaagacaacaatttatctcgtatacgatgaacca 5372398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 47985473 - 47985352
Alignment:
Q  8 cccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattggcaagactt 107  Q
    |||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||| || | || ||||||| |||||||||||  |||||||||| |||     
T  47985473 cccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtatatgataattcaattggcaaaacta 47985374  T
Q  108 tggatttatatcatttaccaga 129  Q
    | ||| | ||||||||||||||    
T  47985373 ttgatctgtatcatttaccaga 47985352  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 48004047 - 48003926
Alignment:
Q  8 cccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattggcaagactt 107  Q
    |||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||| || | || ||||||| |||||||||||  |||||||||| |||     
T  48004047 cccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtatatgataattcaattggcaaaacta 48003948  T
Q  108 tggatttatatcatttaccaga 129  Q
    | ||| | ||||||||||||||    
T  48003947 ttgatctgtatcatttaccaga 48003926  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 47994759 - 47994639
Alignment:
Q  9 ccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattggcaagacttt 108  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||| || | || ||||||| |||||||||||  |||||||||| ||| |    
T  47994759 ccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtatatgataattcaattggcaaaactat 47994660  T
Q  109 ggatttatatcatttaccaga 129  Q
     ||| | ||||||||||||||    
T  47994659 tgatctgtatcatttaccaga 47994639  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 48013331 - 48013211
Alignment:
Q  9 ccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattggcaagacttt 108  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||| || | || ||||||| |||||||||||  |||||||||| ||| |    
T  48013331 ccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtatatgataattcaattggcaaaactat 48013232  T
Q  109 ggatttatatcatttaccaga 129  Q
     ||| | ||||||||||||||    
T  48013231 tgatctgtatcatttaccaga 48013211  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 4122731 - 4122636
Alignment:
Q  1 tatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaat 96  Q
    |||||| || ||||||||||| ||| | |||||||||||||  ||  ||||||| |||| ||||||| || |||||||  |||||||| |||||||    
T  4122731 tatggaacctggtgacaaagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatatatgatgaaccaat 4122636  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 7884219 - 7884145
Alignment:
Q  24 aggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattg 98  Q
    |||||||||||||||||   |||   ||||| |||||||| |||||||||||||| || |||||| |||||||||    
T  7884219 aggtggttgttgtttttacaaatgaattcattgtgaagaaaacaacaatttatcttgtctatgatgaaccaattg 7884145  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 4132676 - 4132607
Alignment:
Q  30 ttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattgg 99  Q
    |||||||||||| |||  ||||||| |||| ||||||| || |||||||  |||||||| ||||||||||    
T  4132676 ttgttgtttttgggaacagtttcattgtgatgaagacagcagtttatctcatatatgatgaaccaattgg 4132607  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 36212986 - 36212912
Alignment:
Q  23 gaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaatt 97  Q
    ||||| |||||||||||||||||   |||||| |||||||||||| | ||||||||  | |||||| ||||||||    
T  36212986 gaggttgttgttgtttttgagaacaatttcattgtgaagaagacagcgatttatctcatttatgatgaaccaatt 36212912  T

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