View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17539_low_26 (Length: 300)
Name: NF17539_low_26
Description: NF17539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17539_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 389163 - 389435
Alignment:
| Q |
18 |
tgcatatgattaataagactaagctccaagctaaacaaatattatttaatagtatggaagaaattgaaaagtggataagttaagaaatcccttgttgaca |
117 |
Q |
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| T |
389163 |
tgcatatgattaataagactaagctccaagctaaacaaatattatttaatagtatggaagaaattgaaaagtggataagttaagaaatcccttgttgaca |
389262 |
T |
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| Q |
118 |
aattaatctgtgtcaccttccaatctagctttatatatgtttgaagtaacttaaagaacaaagaaagatgaattcaagagagtgtgaagttgagcaatag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
389263 |
aattaatctgtgtcaccttccaatctagctttatatatgtttgaagtaacttaaagaacaaagaaagatgaattgaagagagtgcgaagttgagcaatag |
389362 |
T |
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| Q |
218 |
aatcttgcaggtaactgttccacgatatagcgggaattctagtctgcagttggtttctcttgaagtagaatta |
290 |
Q |
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|||||||||||||||||||||| |||| || ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
389363 |
aatcttgcaggtaactgttccatgataaagtgggaattctagtctgcagttgttttctcttgaagtagaatta |
389435 |
T |
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