View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17539_low_27 (Length: 297)
Name: NF17539_low_27
Description: NF17539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17539_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 282
Target Start/End: Original strand, 50200860 - 50201127
Alignment:
| Q |
14 |
agagggcagaagaaccctacctgttaccaagaacagcatgcaatttgacaatgatttcttcctcctgaggagttatgttacctctcttcacatctgatct |
113 |
Q |
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| T |
50200860 |
agagggcagaagaaccctacctgttaccaagaacagcatgcaatttgacaatgatttcttcctcctgaggagttatgttacctctcttcacatctgatct |
50200959 |
T |
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| Q |
114 |
taagtagtttatccatctgagtctgcaactctttccacatctcaacaaacctaatatttcattttgtttnnnnnnnnnnnnaatactcagatcagacaca |
213 |
Q |
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| T |
50200960 |
taagtagtttatccatctgagtctgcaactctttccacatctcaacaaacctaatatttcattttgtttatatatatatac-atactcagatcagacaca |
50201058 |
T |
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| Q |
214 |
ataacatatttaaatatcatcaaaatcattaatcatttacctgcattctttggcaaagatctccaagat |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50201059 |
ataacatatttaaatatcatcaaaatcattaatcatttacctgcattctttggcaaagatctccaagat |
50201127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 165
Target Start/End: Complemental strand, 13343099 - 13342974
Alignment:
| Q |
40 |
ccaagaacagcatgcaatttgacaatgatttcttcctcctgaggagttatgttacctctcttcacatctgatcttaagtagtttatccatctgagtctgc |
139 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||| | |||||| |||||||||||||||| ||| || ||||| |||||||| ||||| | |
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| T |
13343099 |
ccaagaacagcatgcaacttgacaatgatttcttcctcatgaggggatatgtttcctctcttcacatctgctctcaaatagttgatccatcttagtctac |
13343000 |
T |
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| Q |
140 |
aactctttccacatctcaacaaacct |
165 |
Q |
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| T |
13342999 |
aactcttcccacaccttaacaaacct |
13342974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 48892603 - 48892676
Alignment:
| Q |
82 |
ggagttatgttacctctcttcacatctgatcttaagtagtttatccatctgagtctgcaactctttccacatct |
155 |
Q |
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||||||||||| |||||||| | ||||| ||||| ||||| |||||||| ||||||||||| ||||||||||| |
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| T |
48892603 |
ggagttatgtttcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatct |
48892676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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