View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17539_low_28 (Length: 275)

Name: NF17539_low_28
Description: NF17539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17539_low_28
NF17539_low_28
[»] chr1 (7 HSPs)
chr1 (1-254)||(6450161-6450419)
chr1 (129-219)||(16192259-16192348)
chr1 (99-200)||(27900887-27900988)
chr1 (116-197)||(33746355-33746436)
chr1 (67-219)||(6727948-6728100)
chr1 (2-51)||(27900786-27900835)
chr1 (116-200)||(33746821-33746905)
[»] chr4 (1 HSPs)
chr4 (117-200)||(40407640-40407722)
[»] chr5 (1 HSPs)
chr5 (70-128)||(14121990-14122048)
[»] chr2 (3 HSPs)
chr2 (135-220)||(6788507-6788591)
chr2 (98-153)||(1517785-1517841)
chr2 (99-154)||(12676447-12676503)
[»] chr8 (1 HSPs)
chr8 (116-175)||(42844878-42844937)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 6450161 - 6450419
Alignment:
Q  1 tatacttatttactgttatatcaatccacataagtacttatttattgtcataatagtagttcataaaagaaaagagttactttctgcattgaagaactat 100  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||    
T  6450161 tatactcatttactgttaaatcaatccacataagtacttatttattgtcataatagtagttcataaaataaaggagttactgtctgcattgaagaactat 6450260  T
Q  101 tttaacgtcaacaattattttgactaatt-----aatgtacaatcaaagactattttaaattttttgatacattgaaggattgttatggctactggttac 195  Q
    ||||||||||| |||||||| ||||||||     |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||    
T  6450261 tttaacgtcaaaaattatttcgactaattaacagaatgtataatcaaagactattttaaattttttgatacattgaaggattgttatgactattcgttac 6450360  T
Q  196 acattgaatgacgaaaatgactatttaacctatttatattaatgtttgatatatagtag 254  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  6450361 acattgaatgatgaaaatgactatttaacttatttatattaatgtttgatatatagtag 6450419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 219
Target Start/End: Original strand, 16192259 - 16192348
Alignment:
Q  129 taatgtacaatcaaagactattttaaattttttgatacattgaaggattgttatggctactggttacacattgaatgacgaaaatgactat 219  Q
    ||||| ||||||| | ||||||||||| |||| |||||||||||||| | ||||| ||||| |||||||||| ||  || |||||||||||    
T  16192259 taatgcacaatcagaaactattttaaaatttt-gatacattgaaggaatattatgactacttgttacacattcaagtactaaaatgactat 16192348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 200
Target Start/End: Original strand, 27900887 - 27900988
Alignment:
Q  99 attttaacgtcaacaattattttgactaattaat-gtacaatcaaagactattttaaattttttgatacattgaaggattgttatggctactggttacac 197  Q
    ||||||||||||   | ||||| |||||| |||| | ||||||| ||||||||||||||||||| ||||||||||||| | || || |||||  ||||||    
T  27900887 attttaacgtcatggactatttcgactaactaattgcacaatcatagactattttaaatttttt-atacattgaaggactattctgactactcattacac 27900985  T
Q  198 att 200  Q
    |||    
T  27900986 att 27900988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 33746436 - 33746355
Alignment:
Q  116 tattttgactaattaa-tgtacaatcaaagactattttaaattttttgatacattgaaggattgttatggctactggttacac 197  Q
    |||||||||||||||| ||||||||||| |||||||||| | |||||  ||||||||| |||| || || ||||| |||||||    
T  33746436 tattttgactaattaagtgtacaatcaatgactattttacaattttt-ctacattgaatgattattgtgactactcgttacac 33746355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 219
Target Start/End: Original strand, 6727948 - 6728100
Alignment:
Q  67 aagaaaagagttactttctgcattgaagaactattttaacgtcaacaattattttgactaa-ttaatgtacaatcaaagactattttaaattttttgata 165  Q
    ||||||||||||| | ||  |||||||| |||||||||| |||||  | ||||||||||||  || || |||||  |||||||||||  |  |||||||     
T  6727948 aagaaaagagttagtgtcaacattgaagcactattttaaagtcaaagactattttgactaacatagtgcacaatggaagactattttgga-attttgatt 6728046  T
Q  166 cattgaaggattgttatggctactggttacacattgaatgacgaaaatgactat 219  Q
    |||||||||| | || || ||| | |||||||||| |  |||||||||||||||    
T  6728047 cattgaaggactattgtgactattcgttacacattcagggacgaaaatgactat 6728100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 27900835 - 27900786
Alignment:
Q  2 atacttatttactgttatatcaatccacataagtacttatttattgtcat 51  Q
    ||||||||||| ||| ||||||||||  ||||||||||| ||||||||||    
T  27900835 atacttatttattgtcatatcaatccttataagtacttacttattgtcat 27900786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 33746905 - 33746821
Alignment:
Q  116 tattttgactaattaa-tgtacaatcaaagactattttaaattttttgatacattgaaggattgttatggctactggttacacatt 200  Q
    |||||||||||||||| ||||||||||| |||||||||| | ||| |  ||||||||| |||| || || ||||| ||||||||||    
T  33746905 tattttgactaattaagtgtacaatcaatgactattttacaatttat-ctacattgaatgattattgtgactactcgttacacatt 33746821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 200
Target Start/End: Original strand, 40407640 - 40407722
Alignment:
Q  117 attttgactaattaatgtacaatcaaagactattttaaattttttgatacattgaaggattgttatggctactggttacacatt 200  Q
    ||||||||||   |||| |||||||| |||||||||||| |||| |||||||||||||| | |||||| ||||  |||||||||    
T  40407640 attttgactagcaaatgcacaatcaatgactattttaaaatttt-gatacattgaaggactattatggttactccttacacatt 40407722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 14121990 - 14122048
Alignment:
Q  70 aaaagagttactttctgcattgaagaactattttaacgtcaacaattattttgactaat 128  Q
    |||||||||| | ||  |||||||||||||||||||||||   ||||||||||||||||    
T  14121990 aaaagagttattatcaacattgaagaactattttaacgtcgtgaattattttgactaat 14122048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 6788507 - 6788591
Alignment:
Q  135 acaatcaaagactattttaaattttttgatacattgaaggattgttatggctactggttacacattgaatgacgaaaatgactatt 220  Q
    ||||||| | ||||||||||| |||| ||||||||||| || | ||||| ||| | |||||||||| || || |||||||||||||    
T  6788507 acaatcagaaactattttaaaatttt-gatacattgaatgactattatgactatttgttacacatttaaggatgaaaatgactatt 6788591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 1517785 - 1517841
Alignment:
Q  98 tattttaacgtcaacaattattttgactaattaa-tgtacaatcaaagactatttta 153  Q
    |||||||||||||| || ||| ||||||||| || |||||||||| |||||||||||    
T  1517785 tattttaacgtcaagaactatattgactaatgaagtgtacaatcatagactatttta 1517841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 12676503 - 12676447
Alignment:
Q  99 attttaacgtcaacaattattttgactaattaa-tgtacaatcaaagactattttaa 154  Q
    ||||||||||||  ||||||||||||||| ||| || ||||||| ||||||||||||    
T  12676503 attttaacgtcagaaattattttgactaactaagtgcacaatcatagactattttaa 12676447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 42844937 - 42844878
Alignment:
Q  116 tattttgactaattaa-tgtacaatcaaagactattttaaattttttgatacattgaagga 175  Q
    |||||||||||||||| ||||||||||||| |||||  ||| |||| ||||||||||||||    
T  42844937 tattttgactaattaagtgtacaatcaaagcctattcgaaaatttt-gatacattgaagga 42844878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University