View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17539_low_3 (Length: 620)
Name: NF17539_low_3
Description: NF17539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17539_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 10 - 530
Target Start/End: Original strand, 35454405 - 35454930
Alignment:
| Q |
10 |
catcatcaccaaatatgtgaggaga--aaaacttgaatattaaaattctgatatgctcatctccccactgcttccttttttagacccatgtttgagttat |
107 |
Q |
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| T |
35454405 |
catcaacaccaaacatgtgaggagagaaaaacttgaatattaaaattctgatatgctcatcgccccactgcttccttttttagacccatgtttgagttat |
35454504 |
T |
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| Q |
108 |
gagtattacaagg-aatgcttgaaatatctccatgagcagacttatcaaccataccaaatgataatccaccgttattgatgatatattagataaactgga |
206 |
Q |
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| T |
35454505 |
gagtattacaagggaatgcttgaaatatctccatgagcagacttatcaaccataccaaatgataatccaccgttattgat---atattaggtaaactgga |
35454601 |
T |
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| Q |
207 |
atccaaaccttatagaatattttcttggttcagtcggnnnnnnnntaatacaattgaactttaaataataaagaagataagttctcttcttttttaagtc |
306 |
Q |
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| T |
35454602 |
atccaaaccttatagaatattttcttggttcagtcggaaaaaaaatattacaattgaactttaaataataaagaagataagttctcttcttttttaagtc |
35454701 |
T |
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| Q |
307 |
tccagagcagtaaatatgtattttgaattttggcaataatac----aagttaagaaatgtctttgtcatttgagcatgtcacgttctattagaattgcat |
402 |
Q |
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| T |
35454702 |
tccagaacagtaaatatgtattttgaattttggcaataatacatacaagttaagaaatgtctctgtcatttgagcacgtcatgttatattagagttgcat |
35454801 |
T |
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| Q |
403 |
tcaatatgagaaagtataaagaaatttacaatcatggattcgtgatccattagaatttggtggtgatggagcatcaagataatgaaa-ttaatatatcta |
501 |
Q |
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| T |
35454802 |
tcaatatgagaaagtataaagaaatttacaatcatggattcgtgatctattagaatttggtggtgatggagcatcaagataatgaaatttaatatatcta |
35454901 |
T |
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| Q |
502 |
ttgtcgtttttattgcaaccaaattggaa |
530 |
Q |
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| T |
35454902 |
ttgtcgtttttattgcaaccaaatcggaa |
35454930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 541 - 605
Target Start/End: Original strand, 35454989 - 35455053
Alignment:
| Q |
541 |
atcttaacaagtaatcacacgaatttacatatatatacagatatggaaaagttaattgcacatag |
605 |
Q |
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| T |
35454989 |
atcttaacaagtaatcacacgaatttacatatatatacagatatggaaaagttaattgcacatag |
35455053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 174
Target Start/End: Original strand, 35441007 - 35441087
Alignment:
| Q |
91 |
acccatgtttgagttatgagtattacaaggaatgcttgaaatatctccatgagcagacttatcaaccataccaaatgataatcc |
174 |
Q |
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| T |
35441007 |
acccatgtttgagttctgagtaa---aagtcatgcttggaatatctccatgagcagacgtatcaaccataccaaatgatgatcc |
35441087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 35449055 - 35449100
Alignment:
| Q |
122 |
atgcttgaaatatctccatgagcagacttatcaaccataccaaatg |
167 |
Q |
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| T |
35449055 |
atgcttgaaaaatctccatgagcagacatatcaaccatacgaaatg |
35449100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 51575288 - 51575383
Alignment:
| Q |
88 |
tagacccatgtttgagttatgagtattacaaggaatgcttgaaatatctccatgagcagacttatcaaccataccaaatgataatccaccgttatt |
183 |
Q |
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| T |
51575288 |
tagacccatgtttgagttccgagtattataaggcatgcttgaaatatcaccacgaggagacacatcaaccataccaaatgatgaaccaccgctatt |
51575383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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