View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17539_low_33 (Length: 247)
Name: NF17539_low_33
Description: NF17539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17539_low_33 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 3 - 231
Target Start/End: Complemental strand, 51033969 - 51033739
Alignment:
| Q |
3 |
ttgtatggtcaatatcactttgttgagaaatctcacgcctgccaaatgttgnnnnnnn-gcttagagttaatattgaccgcaacctgcaattttcatttc |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
51033969 |
ttgtatggtcaatatcactttgttgagaaatctcacgcctgccgaatgttgaaaaaaaagcttagagttaatattgaccgcaacctgcaaatttcatttc |
51033870 |
T |
|
| Q |
102 |
caatgttgcaccatttaattttaaactactcgtaataatagaaatggtaatgaagtcgcttgaactaaagctttgt-aattgattgcattgacatgtagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
51033869 |
caatgttgcaccatttaattttaaactactcctaataatagaaatggtaatgaagtcgcttgaactaaagctttgtaaattgattgcatttacatgtagt |
51033770 |
T |
|
| Q |
201 |
ttattgcagaacctggaattgagcaccaaat |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
51033769 |
ttattgcagaacctggaattgagcaccaaat |
51033739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 111 - 231
Target Start/End: Complemental strand, 51040906 - 51040778
Alignment:
| Q |
111 |
accatttaattttaaactactcgtaataatagaaatggtaatgaagtcgcttgaac--------taaagctttgtaattgattgcattgacatgtagttt |
202 |
Q |
| |
|
|||||||||||| ||||||||| ||||| |||||||| |||||||||| ||||||| |||||||||| |||||||||| |||| ||| ||||| |
|
|
| T |
51040906 |
accatttaatttcaaactactcataatagtagaaatgataatgaagtcacttgaacagttgaactaaagctttgcaattgattgctttgatatgcagttt |
51040807 |
T |
|
| Q |
203 |
attgcagaacctggaattgagcaccaaat |
231 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
51040806 |
attgcagaacctggaattgagcaccaaat |
51040778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 51040991 - 51040957
Alignment:
| Q |
17 |
tcactttgttgagaaatctcacgcctgccaaatgt |
51 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
51040991 |
tcactttgttgagaaatctcacacctgccaaatgt |
51040957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 37642178 - 37641947
Alignment:
| Q |
1 |
tattgtatggtcaatatcactttgttgagaaatctcacgcctgccaaatgttgnnnnnnngcttagagtt---------aatattgaccgcaacctgcaa |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | | | | || ||||||| | ||||||||||| |
|
|
| T |
37642178 |
tattgtatggtcaatatcactttgttgagaaatctcacgcctgccaaatgtggacttccctcatcaatttgaaagaaaaaatattggctgcaacctgcaa |
37642079 |
T |
|
| Q |
92 |
ttttcatttccaatgttgcaccatttaattttaaactactcgtaataatagaaatggtaatgaagtcgcttgaactaaagctttgtaattgattgcattg |
191 |
Q |
| |
|
|||| || || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||| ||| |
|
|
| T |
37642078 |
tttt---tttcagtgttgcaccatttaatttaaaactactcgtaataatagaaatggtaatgaagtcgct-----taaagatttgcaattgattgctttg |
37641987 |
T |
|
| Q |
192 |
acatgtagtttattgcagaacctggaattgagcaccaaat |
231 |
Q |
| |
|
| ||| |||||||||| ||||||| ||||||||||||||| |
|
|
| T |
37641986 |
atatgcagtttattgctgaacctgaaattgagcaccaaat |
37641947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University