View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17539_low_37 (Length: 237)
Name: NF17539_low_37
Description: NF17539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17539_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 55320367 - 55320154
Alignment:
| Q |
17 |
aattgcaaggcatgttttgttaatttcataacaagtgatacttacttacacaaagctatattttgctttcttgataaatttggttcctcctgtgaatgat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
55320367 |
aattgcaaggcatgttttgttaatttcataacaagtgatacttacttacacaaagctatattttgctttcttgataaatttggttcgtcctgtgaatgat |
55320268 |
T |
|
| Q |
117 |
tgttggagcagttatttgcatgtaatcacaaggtatactatatagtgttgtgtttgtgccttttggttctatttttatggcgaggttgcttttcatgtcc |
216 |
Q |
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|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55320267 |
tgttggagcagttatttgcatggaatcacagggtatactatatagtgttgtgtttgtgccttttggttctatttttatggcgaggttgcttttcatgtcc |
55320168 |
T |
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| Q |
217 |
acttgcctttgcta |
230 |
Q |
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|||||||||||||| |
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| T |
55320167 |
acttgcctttgcta |
55320154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 31951464 - 31951279
Alignment:
| Q |
17 |
aattgcaaggcatgttttgttaatttcataacaagtgatacttacttacacaaagctatattttgctttcttgataaatttggttcctcctgtgaatgat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31951464 |
aattgcaaggcatgttttgttaatttcataacaagtgatacttacttacacaaagctatattttgctttcttgatagatttggttcctcctgtgaatgat |
31951365 |
T |
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| Q |
117 |
tgttggagcagttatttgcatgtaatcacaaggtatactatatagtgttgtgtttgtgccttttggttctatttttatggcgaggt |
202 |
Q |
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| T |
31951364 |
tgttggagcagttatttgcatggaatcataaggtatactatatagtgttgtgtttgtgccttttggttctatttttatggcgaggt |
31951279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 226
Target Start/End: Original strand, 2778043 - 2778252
Alignment:
| Q |
17 |
aattgcaaggcatgttttgttaatttcataacaagtgatacttacttacacaaagctatattttgctttcttgataaatttggttcctcctgtgaatgat |
116 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
2778043 |
aattgcaaggcatgttttgttaatttcatgacaagtgatacttacttacacaaagctatattttgctttcttgatagttttgtatcctcctgtgaatgat |
2778142 |
T |
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| Q |
117 |
tgttggagcagttatttgcatgtaatcacaaggtatactatatagtgttgtgtttgtgccttttggttctatttttatggcgaggttgcttttcatgtcc |
216 |
Q |
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|||||||||||||||||||||| |||||||||||||| | || ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2778143 |
tgttggagcagttatttgcatggaatcacaaggtataatttacagtgttgcgtttgtgccttttggttctatttttatggcgaggctgcttttcatgtcc |
2778242 |
T |
|
| Q |
217 |
acttgccttt |
226 |
Q |
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|||||||||| |
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|
| T |
2778243 |
acttgccttt |
2778252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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