View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17539_low_39 (Length: 228)
Name: NF17539_low_39
Description: NF17539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17539_low_39 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 26866863 - 26867065
Alignment:
| Q |
21 |
ttctcaaaatggtcttataatcaggaacggatatagtactatatattgggctgtacggttgaagtaaaaaacgttggctcaacaggatttgtcctaatta |
120 |
Q |
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| T |
26866863 |
ttctcaaaagggtcttataattaaggacggaggtagtactatatattgggttgtacagttgaagtaaaaaacgttggctcaacaggatttgtcctaatta |
26866962 |
T |
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| Q |
121 |
tatatacattttcgctttgaagcgttagctaacaagtaacaacttcgattatgatagaatatccctataccagaatatttttatatttaatgtaaagata |
220 |
Q |
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| T |
26866963 |
tatatacattttcg-----aagcgttagctaacaagtaacaacttcgattttgatagaatatccctataccagaatatttttatatttaatgtaaagata |
26867057 |
T |
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| Q |
221 |
ttctaatc |
228 |
Q |
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|||||||| |
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| T |
26867058 |
ttctaatc |
26867065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 34948651 - 34948688
Alignment:
| Q |
21 |
ttctcaaaatggtcttataatcaggaacggatatagta |
58 |
Q |
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| T |
34948651 |
ttctcaaaatggtcttataattaggaacggatgtagta |
34948688 |
T |
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