View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17539_low_5 (Length: 566)
Name: NF17539_low_5
Description: NF17539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17539_low_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 1 - 566
Target Start/End: Complemental strand, 22543051 - 22542486
Alignment:
| Q |
1 |
gatctgaacatgtgattcttttagattgttggtacttcaaaatttatgttctgtacaatttctgtgcatcannnnnnncattataggtcaaatttgaatc |
100 |
Q |
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| T |
22543051 |
gatctgaacatgtgattcttttagattgttggtacttcaaaatttatgttctgtacaatttctgtgcatcatttttttcattataggtcaaatttgaatc |
22542952 |
T |
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| Q |
101 |
ctataatatatgttttttcttcaaacttctcttggtcactatccttactaattcatattctagaagctagtgtataatttgcatgctatggtgtaattgg |
200 |
Q |
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| T |
22542951 |
ctataatatatgttttttcttcaaacttctcttggtcactatccttactaattcatattctagaagctagtgtataatttgcatgctatggtgtaattgg |
22542852 |
T |
|
| Q |
201 |
ctttattcaattacacaaatgatagcactgaagttttaatcaaaagatataatgcattattttttgcaatacttatacatctaagtgtcttattggttgt |
300 |
Q |
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| T |
22542851 |
ctttattcaattacacaaatgaaagcgctgaagttttaatcaaaagatataatgcattattttttgcaatacttatacatctaagtgtcttattggttgt |
22542752 |
T |
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| Q |
301 |
agttttgttatttatcttcttcactccatgttggttatgtctaaatattgtggtaaaggttcaaccattggttgaacatgaacaaacgattggtttccgt |
400 |
Q |
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| T |
22542751 |
agttttgttatatatcttcttcactccatgttggttatgtctaaatattgtggtaaagcttcaaccattggttgaacatgaacaaacgattggtttccgt |
22542652 |
T |
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| Q |
401 |
tggaccgaatagttgaactgaagtagcatctgttttggttgtgcgtccaacatgcaattattgcatctcgaggctgttttcgcctcaatttcaagaacct |
500 |
Q |
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| T |
22542651 |
tggaccgaatagttgaactgaagtagcatctgttttggttgtgcgtccaacatgcaattattgcatctcgaggctgttttcgcctcaatttcaagaacct |
22542552 |
T |
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| Q |
501 |
atacatccaagctattgcctaaatgtgctgccaagtccaactaaattaaacagagtgacaaacatt |
566 |
Q |
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| T |
22542551 |
atacatccaagctattgcctaaatgtgcggccaagtccaactaaattaaacacagcgacaaacatt |
22542486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 434 - 513
Target Start/End: Original strand, 32788869 - 32788948
Alignment:
| Q |
434 |
tttggttgtgcgtccaacatgcaattattgcatctcgaggctgttttcgcctcaatttcaagaacctatacatccaagct |
513 |
Q |
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||||||||||||||||| ||||||||| || ||| ||||| |||||| || ||||||||| || |||||||| |||||| |
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| T |
32788869 |
tttggttgtgcgtccaatatgcaattaccgcgtcttgaggcagttttcaccgcaatttcaacaagctatacattcaagct |
32788948 |
T |
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