View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17539_low_8 (Length: 442)
Name: NF17539_low_8
Description: NF17539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17539_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Original strand, 22498399 - 22498808
Alignment:
| Q |
18 |
aattgtatcctcataaaataattatttggtttgtatttcaaaattgaaccggtgaaacatacctttgctaggctcaattaaattttgcttgctatctacc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22498399 |
aattgtatcctcataaaataattatttggtttgtatttcaaaattgaaccggtgaaacatacctttgctaggctcaattaaattttgcttgctatctacc |
22498498 |
T |
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| Q |
118 |
gttccaaatccatccgtcgacacaatagaaacactttcaattgattcacttcgtgaacaatcaacttgcaaaagtagacc--nnnnnnnnnnnncaatca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22498499 |
gttccaaatccatccgtcgacacaatagaaacactttcaattgattcacttcgtgaacaatcaacttgcaaaagtagaccaaaaaaaaaaaaaacaatca |
22498598 |
T |
|
| Q |
216 |
agtaaacacaagtattatgagagaagaaaacagaatggaaaaatgtaattctcattgtttctaactaacttgtacagcaagtatatatacagaaactaat |
315 |
Q |
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|||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22498599 |
tgtaatcacaagtataatgagagaagaaaacggaatggaaaaatgtaattctcattgtttctaactaacttgtacagcaagtatatatacacaaactaat |
22498698 |
T |
|
| Q |
316 |
ccttatgctaattaactaacatgatcttattgcataggattccaatatcataactaactatcttagttacttgctatgcaagctattaaatttactactc |
415 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22498699 |
ccttatgc----taactaacatgatcttattgcataggattccaatatcataactaactatcttagttacttgctatgcaagctattacatttactactc |
22498794 |
T |
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| Q |
416 |
tcttttttcttatt |
429 |
Q |
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|||||||||||||| |
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| T |
22498795 |
tcttttttcttatt |
22498808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 362 - 429
Target Start/End: Complemental strand, 16834882 - 16834815
Alignment:
| Q |
362 |
atcataactaactatcttagttacttgctatgcaagctattaaatttactactctcttttttcttatt |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||| |
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| T |
16834882 |
atcataactaactatcttagttacttgctatgcaagctattacttttactactctctttctccttatt |
16834815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 429
Target Start/End: Complemental strand, 7695414 - 7695367
Alignment:
| Q |
382 |
ttacttgctatgcaagctattaaatttactactctcttttttcttatt |
429 |
Q |
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|||||||||||||||||||||| |||||| ||||||| ||| |||||| |
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| T |
7695414 |
ttacttgctatgcaagctattacatttaccactctctatttccttatt |
7695367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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