View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17539_low_9 (Length: 430)
Name: NF17539_low_9
Description: NF17539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17539_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 9 - 414
Target Start/End: Original strand, 4876362 - 4876767
Alignment:
| Q |
9 |
gagatgaaaaaccagtttgagatgtctagcttaggggaaatgaactattttctcggcttggaagtgcatcaatctgagaatggaannnnnnngaatcaag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
4876362 |
gagatgaaaaaccagtttgagatgtctagcttaggggaaatgaactattttctcggcttggaagtgcatcaatctgagaatggaatttttttgaatcaag |
4876461 |
T |
|
| Q |
109 |
agaagtatgctcgtgaagttttgaagaagtttaaaatggaaagctgcaaatctgctccaactcctttggtgtggaatttgaaactctcaaaggaagatga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4876462 |
agaagtatgctcgtgaagttttgaagaagtttaaaatggaaagctgcaaatctgctccaactcctttggtgtggaatttgaaactctcaaaggaagatga |
4876561 |
T |
|
| Q |
209 |
agctgaaaaaattgatgcttctcgttatagaagtttgattgggagtctactctatcttacttcatctagacctgatcttatgtatgcagcaagcttactc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4876562 |
agctgaaaaaattgatgcttctcgttatagaagtttgattgggagtctactctatcttacttcatctagacctgatcttatgtatgcagcaagcttactc |
4876661 |
T |
|
| Q |
309 |
tcaagatttatgcagaatcctaccaagacacattttgctgcagcaaagagggtacttagatatgttaagggtactactcaattcggaatatggtacaagc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4876662 |
tcaagatttatgcagaatcctaccaagacacattttgctgcagcaaagagggtacttagatatgttaagggtactactcaattcggaatatggtacaagc |
4876761 |
T |
|
| Q |
409 |
caagtg |
414 |
Q |
| |
|
|||||| |
|
|
| T |
4876762 |
caagtg |
4876767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 9 - 414
Target Start/End: Original strand, 30188979 - 30189384
Alignment:
| Q |
9 |
gagatgaaaaaccagtttgagatgtctagcttaggggaaatgaactattttctcggcttggaagtgcatcaatctgagaatggaannnnnnngaatcaag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||| |
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|
| T |
30188979 |
gagatgaaaaaccagtttgagatgtctagcttaggggaaatgaactattttcttggcttggaagtgcatcaatctgagagtggaatttttttgaatcaag |
30189078 |
T |
|
| Q |
109 |
agaagtatgctcgtgaagttttgaagaagtttaaaatggaaagctgcaaatctgctccaactcctttggtgtggaatttgaaactctcaaaggaagatga |
208 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30189079 |
agaagaatgctcatgaagttttgaagaagtttaaaatggaaagctgcaaatctgctccaactcctttggtgtggaatttgaaactctcaaaggaagatga |
30189178 |
T |
|
| Q |
209 |
agctgaaaaaattgatgcttctcgttatagaagtttgattgggagtctactctatcttacttcatctagacctgatcttatgtatgcagcaagcttactc |
308 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30189179 |
agctgaaaaaattgatgcttctcattatagaagtttgattggaagtctactttatcttacttcatctagacctgatcttatgtatgcagcaagcttactc |
30189278 |
T |
|
| Q |
309 |
tcaagatttatgcagaatcctaccaagacacattttgctgcagcaaagagggtacttagatatgttaagggtactactcaattcggaatatggtacaagc |
408 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
30189279 |
tcaagatttatgcagagtcctaccaagacacattttgctgcagcaaagagggtacttagatatgttaagggtactaataaattcggaatatggtacaagc |
30189378 |
T |
|
| Q |
409 |
caagtg |
414 |
Q |
| |
|
|||||| |
|
|
| T |
30189379 |
caagtg |
30189384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 9 - 414
Target Start/End: Complemental strand, 17440481 - 17440076
Alignment:
| Q |
9 |
gagatgaaaaaccagtttgagatgtctagcttaggggaaatgaactattttctcggcttggaagtgcatcaatctgagaatggaannnnnnngaatcaag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
17440481 |
gagatgaaaaaccagtttgagatgtctagcttaggggaaatgaactattttctcggcttggaagtgcatcaatctgagaatggaatttttttgaatcaag |
17440382 |
T |
|
| Q |
109 |
agaagtatgctcgtgaagttttgaagaagtttaaaatggaaagctgcaaatctgctccaactcctttggtgtggaatttgaaactctcaaaggaagatga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17440381 |
agaagtatgctcgtgaagttttgaagaagtttaaaatggaaagctgcaaatctgctccaactcctttggtgtggaatttgaaactctcaaaggaagatga |
17440282 |
T |
|
| Q |
209 |
agctgaaaaaattgatgcttctcgttatagaagtttgattgggagtctactctatcttacttcatctagacctgatcttatgtatgcagcaagcttactc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17440281 |
agctgaaaaaattgatgcttctcgttatagaagtttgattgggagtctactctatcttacttcatctagacctgatcttatgtatgcagcaagcttactc |
17440182 |
T |
|
| Q |
309 |
tcaagatttatgcagaatcctaccaagacacattttgctgcagcaaagagggtacttagatatgttaagggtactactcaattcggaatatggtacaagc |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17440181 |
tcaagatttatgcagaatcctaccaagacacattttgctgcagcaaagagggtacttagatatgttaagggtactactcaatttggaatatggtacaagc |
17440082 |
T |
|
| Q |
409 |
caagtg |
414 |
Q |
| |
|
|||||| |
|
|
| T |
17440081 |
caagtg |
17440076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 9 - 414
Target Start/End: Original strand, 3061719 - 3062124
Alignment:
| Q |
9 |
gagatgaaaaaccagtttgagatgtctagcttaggggaaatgaactattttctcggcttggaagtgcatcaatctgagaatggaannnnnnngaatcaag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3061719 |
gagatgaaaaaccagtttgagatgtctagcttaggggaaatgaactattttctcggcttggaagtgcatcaatctgagaatggaatttttttgaatcaag |
3061818 |
T |
|
| Q |
109 |
agaagtatgctcgtgaagttttgaagaagtttaaaatggaaagctgcaaatctgctccaactcctttggtgtggaatttgaaactctcaaaggaagatga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3061819 |
agaagtatgctcgtgaagttttgaagaagtttaaaatggaaagctgcaaatctgctccaactcctttggtgtggaatttgaaactctcaaaggaagatga |
3061918 |
T |
|
| Q |
209 |
agctgaaaaaattgatgcttctcgttatagaagtttgattgggagtctactctatcttacttcatctagacctgatcttatgtatgcagcaagcttactc |
308 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3061919 |
agctggaaaaattgatgcttctcgttatagaagtttgattgggagtctactctatcttacttcatctagacctgatcttatgtatgcatcaagcttactc |
3062018 |
T |
|
| Q |
309 |
tcaagatttatgcagaatcctaccaagacacattttgctgcagcaaagagggtacttagatatgttaagggtactactcaattcggaatatggtacaagc |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3062019 |
tcaagatttatgcagaatcctaccaagacacattttgttgcagcaaagagggtacttagatatgttaagggtactactcaattcggaatatggtacaagc |
3062118 |
T |
|
| Q |
409 |
caagtg |
414 |
Q |
| |
|
|||||| |
|
|
| T |
3062119 |
caagtg |
3062124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 218 - 414
Target Start/End: Complemental strand, 26083769 - 26083573
Alignment:
| Q |
218 |
aattgatgcttctcgttatagaagtttgattgggagtctactctatcttacttcatctagacctgatcttatgtatgcagcaagcttactctcaagattt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26083769 |
aattgatgcttctcgttatagaagtttgattgtaagtctactttatcttacttcatcttgacctgatcttatgtatgcagcaagcttactctcaagattt |
26083670 |
T |
|
| Q |
318 |
atgcagaatcctaccaagacacattttgctgcagcaaagagggtacttagatatgttaagggtactactcaattcggaatatggtacaagccaagtg |
414 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26083669 |
atgcagagtcctaccaagacacattttgctgcagcaaagagggtacttagatatgttaagggtactactcaattcggaatatggtacaagccaagtg |
26083573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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