View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1753_low_10 (Length: 222)
Name: NF1753_low_10
Description: NF1753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1753_low_10 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 4223559 - 4223335
Alignment:
| Q |
1 |
attaaaaagaaggaataaatagtatgataatagaaatgggatagggtttgcggtt--tggtggacatatatgaagctaaaaaagcttagtggtaattgat |
98 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4223559 |
attaaaaagaaggaataaatagtattataatagaaatgggatagggttttcggttgatggtggacatatatgaagctaaaaaagcttagtggtaattgat |
4223460 |
T |
|
| Q |
99 |
tgtg-ttgtggttgaattctaatttgcttcctaaatatggtcatgctgtaatgtgaactagcacataaaaagtgcagctaaaattttgagtggaataacc |
197 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4223459 |
tgtaattgtggttgaattctaatttgcttcctaaatatggtcatgctgtaatgtgaactagtacataaaaagtgcagctaaaattttgagtggaataacc |
4223360 |
T |
|
| Q |
198 |
aattgtaatgaaattgacataaaaa |
222 |
Q |
| |
|
||||||||||||||| ||||||||| |
|
|
| T |
4223359 |
aattgtaatgaaatttacataaaaa |
4223335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University