View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1753_low_2 (Length: 280)
Name: NF1753_low_2
Description: NF1753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1753_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 28288858 - 28288594
Alignment:
| Q |
1 |
cttgaccctcttgatattttcttcacagcaacggctaaatcttgatcaaaaaagtaacctttataaactgctccaaaaccaccttgacctaattttctat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28288858 |
cttgaccctcttgatattttcttcacagcaacggctaaatcttgatcgaaaaagtaacctttataaacagctccaaaaccaccttgacctaattttctat |
28288759 |
T |
|
| Q |
101 |
cgtcggtaaatttattggtagctaaatcaagttcttggtaggtaaacctccttggccctgctcctctttcaaggtcatcattcattgttcttaaatgcat |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28288758 |
cgtcggtaaatttattggtagccaaatcaagttcttggtaggtaaacctccttggccctgctcctctttgaaggtcatcattcattgttcttaaatgcat |
28288659 |
T |
|
| Q |
201 |
agcctcttccattttctttttacttctctttattttcctccaaagtaatgcatatattgccagtg |
265 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28288658 |
agcctcttcctttttctttttacttctctttattttcctccaaagtaatgcatatattgccagtg |
28288594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 28304895 - 28305134
Alignment:
| Q |
1 |
cttgaccctcttgatattttcttcacagcaacggctaaatcttgatcaaaaaagtaacctttataaactgctccaaaaccaccttgacctaattttctat |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||| |||| ||||||||||||| ||||||||||||||||||||||||| || ||||||| |
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| T |
28304895 |
cttgaccctctggatattttcttcacagcaacttgtaaatctaaatcagcaaagtaacctttaaaaactgctccaaaaccaccttgacccaactttctat |
28304994 |
T |
|
| Q |
101 |
cgtcggtaaatttattggtagctaaatcaagttcttggtaggtaaacctccttggccctgctcctctttcaaggtcatcattcattgttcttaaatgcat |
200 |
Q |
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| | | ||| |||||||| || || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
28304995 |
ccttagaaaagttattggttgccaactcaagttctttgtaggtaaacctccttggccctgctcctctttcaaggtcatcattcattgaagtcaaatgcat |
28305094 |
T |
|
| Q |
201 |
agcctcttccattttctttttacttctctttattttcctc |
240 |
Q |
| |
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|||||||||| ||| ||||| |||||||||| |||||||| |
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| T |
28305095 |
agcctcttccttttgcttttcacttctctttcttttcctc |
28305134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 28294693 - 28294943
Alignment:
| Q |
1 |
cttgaccctcttgatattttcttcacagcaacggctaaatcttgatcaaaaaagtaacctttataaactgctccaaaaccaccttgacctaattttctat |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||| |||||||||||||||||||| || ||||||| |
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| T |
28294693 |
cttgatcctcttgatattttcttcacagcaacttgtaaatctaaatcagcaaagtaacctttataaacagctccaaaaccaccttgacccaactttctat |
28294792 |
T |
|
| Q |
101 |
cgtcggtaaatttattggtagctaaatcaagttcttggtaggtaaacctccttggccctgctcctctttcaaggtcatcattcattgttcttaaatgcat |
200 |
Q |
| |
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| | | || |||||||| || ||||||||||||| |||||| ||||| ||||||||||||||||||||||| ||||||||||||| | |||||||| |
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| T |
28294793 |
ccttagagaagttattggttgccaaatcaagttctttgtaggtgaaccttcttggccctgctcctctttcaagatcatcattcattgaagtcaaatgcat |
28294892 |
T |
|
| Q |
201 |
agcctcttccattttctttttacttctctttattttcctccaaagtaatgc |
251 |
Q |
| |
|
|||||||||| ||| ||| |||||||||||| |||||||||||| |||||| |
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|
| T |
28294893 |
agcctcttccttttgcttattacttctctttcttttcctccaaaataatgc |
28294943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 28264878 - 28265103
Alignment:
| Q |
1 |
cttgaccctcttgatattttcttcacagcaacggctaaatcttgatcaaaaaagtaacctttataaactgctccaaaaccaccttgacctaattttctat |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||| |||| ||||||||||||| ||||||||||||||||||||||||| || ||||||| |
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| T |
28264878 |
cttgaccctctggatattttcttcacagcaacttgtaaatctaaatcagcaaagtaacctttaaaaactgctccaaaaccaccttgacccaactttctat |
28264977 |
T |
|
| Q |
101 |
cgtcggtaaatttattggtagctaaatcaagttcttggtaggtaaacctccttggccctgctcctctttcaaggtcatcattcattgttcttaaatgcat |
200 |
Q |
| |
|
| | | ||| |||||||| || || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
28264978 |
ccttagaaaagttattggttgccaactcaagttctttgtaggtaaacctccttggccctgctcctctttcaaggtcatcattcattgaagtcaaatgcat |
28265077 |
T |
|
| Q |
201 |
agcctcttccattttctttttacttc |
226 |
Q |
| |
|
|||||||||| ||| ||||| ||||| |
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| T |
28265078 |
agcctcttccttttgcttttcacttc |
28265103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 28278981 - 28278739
Alignment:
| Q |
13 |
gatattttcttcacagcaacggctaaatcttgatcaaaaaagtaacctttataaactgctccaaaaccaccttgacctaattttctatcgtcggtaaatt |
112 |
Q |
| |
|
|||||||||||||||||||| | ||||||| |||||||||||| ||||||||| || |||||||| ||||||||||| || |||||||| | || | |
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| T |
28278981 |
gatattttcttcacagcaaccggtaaatctggatcaaaaaagttacctttatatacagctccaaacccaccttgacccaactttctatccctagagaagt |
28278882 |
T |
|
| Q |
113 |
tattggtagctaaatcaagttcttggtaggtaaacctccttggccctgctcctctttcaaggtcatcattcattgttcttaaatgcatagcctcttccat |
212 |
Q |
| |
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|||| || ||||||| |||||||| |||||| ||||||||||||||||||||||||||||| || |||||||||| ||||| ||||||||||||| | |
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| T |
28278881 |
tattagtggctaaattaagttctttgtaggtgaacctccttggccctgctcctctttcaagatcgtcattcattgaagttaaactcatagcctcttcctt |
28278782 |
T |
|
| Q |
213 |
tttctttttacttctctttattttcctccaaagtaatgcatat |
255 |
Q |
| |
|
|| ||||| ||||||||| | || |||||||||||||||||| |
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|
| T |
28278781 |
ttctttttttcttctctttgtctttctccaaagtaatgcatat |
28278739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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