View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1753_low_9 (Length: 224)
Name: NF1753_low_9
Description: NF1753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1753_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 212
Target Start/End: Complemental strand, 41940222 - 41940025
Alignment:
| Q |
15 |
tcattgtcatcatcttcacttccactttcttcttcttccatgtaattttcatttactttatgtccatcaaaactcaaagattccaatgtgtgaggagcat |
114 |
Q |
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| T |
41940222 |
tcattgtcatcatcttcacttccactttcttcttcttccatgtaattttcatttactttatgtccatcaaaactcaaagattccaatgtgtgaggagcat |
41940123 |
T |
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| Q |
115 |
ggccattaccaaacgcacgaacatggtcttttagcgatcttttgtgtttgaaatcagaaccacagatacaaaaccaaagcttcccacaattcttctca |
212 |
Q |
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| T |
41940122 |
ggccattaccaaacgcacgaacatggtcttttagcgatcttttgtgtttgaaatcagaaccacagatacaaaaccaaagcttcccacaattcttctca |
41940025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 102 - 212
Target Start/End: Original strand, 22295800 - 22295910
Alignment:
| Q |
102 |
gtgtgaggagcatggccattaccaaacgcacgaacatggtcttttagcgatcttttgtgtttgaaatcagaaccacagatacaaaaccaaagcttcccac |
201 |
Q |
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| T |
22295800 |
gtgtgtggagcatgaccatcaccgaaagcacgaacatgatctttaagagatctcttgtgtttgaaatcagatccacagatacaaaaccaaagctttccac |
22295899 |
T |
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| Q |
202 |
aattcttctca |
212 |
Q |
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| T |
22295900 |
agtttttctca |
22295910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 36570155 - 36570103
Alignment:
| Q |
156 |
ttgtgtttgaaatcagaaccacagatacaaaaccaaagcttcccacaattctt |
208 |
Q |
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| T |
36570155 |
ttgtgtttaaaatcagaaccacagatacaataccaaagctttccacaattctt |
36570103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 39300653 - 39300597
Alignment:
| Q |
156 |
ttgtgtttgaaatcagaaccacagatacaaaaccaaagcttcccacaattcttctca |
212 |
Q |
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| T |
39300653 |
ttgtgtttgaaatctgatccacagatacaaagccaacgcttgccacagtttttctca |
39300597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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