View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17540_high_1 (Length: 1133)
Name: NF17540_high_1
Description: NF17540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17540_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 569; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 1 - 644
Target Start/End: Complemental strand, 40666995 - 40666351
Alignment:
| Q |
1 |
atagaagagaactccttttgatggtgacatcccaaacttctcaaacttttccgggtgctcaactggatattgaacagtctgcgtacacattaaccaaaat |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||| |
|
|
| T |
40666995 |
atagaagagaactcctttggatggtgacatcccaaacttctcaaacttttccgggtgctcaaccggatattgaacagtctacgtacacacaaaccaaaat |
40666896 |
T |
|
| Q |
101 |
cagaaatagataatattggtaaggaaataaggtgtaattaagtactaggaaagatttctgacctcttgcagttcacgcttgacattctcaaggcctccga |
200 |
Q |
| |
|
|||||| || ||| | | |||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40666895 |
cagaaacaggtaaaactagtaaggaaatcaggtgtaattaagtagtaggaaagatttatgacctcttgcagttcacgcttgacattctcaaggcctccga |
40666796 |
T |
|
| Q |
201 |
tgtcctcccagctgacattaggcacctcaacaacctgttaatacagacattcgtaagaaaacagacagcaaaaaaggaatgacccattgactgatgaagt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40666795 |
tgtcctcccagctgacattaggcacctcaacaacctgttaatacagacattcgtaagaaaacagacagcaaaaaaggaatgacccattgactgatcaagt |
40666696 |
T |
|
| Q |
301 |
aatcaactaatgatttctaaatataggagtcgtataaaaaa-ctaacagtttcgcgtagagctgatgggttgcttgttccaagtgcagtatgcaaatgct |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40666695 |
aatcaactaatgatttctaaatataggagtcgtataaaaaaactaacagtttcgcgtagagctgatgggttgcttgttccaagtgcagtatgcaaatgct |
40666596 |
T |
|
| Q |
400 |
catttgtaactgccatggaatttagtatttcagcatcaatagtctcatcctctaagtcaatgacgtccatcttctccctaatgcattggagagcagcttc |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40666595 |
catttgtaactgccatggaatttagtatttcagcatcaatagtctcatcctctaagtcaatgacgtccatcttctccctaatgcattgtagagcagcttc |
40666496 |
T |
|
| Q |
500 |
agtgcaaagagcagcaaggtcagcaccaacatacccatgagtattttttgaaattctctccaaatcaacctacagagtaaaatcgtaaatgagcaactga |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40666495 |
agtgcaaagagcagcaaggtcagcaccaacatacccatgagtattttttgaaattctctccaaatcaacctacagagtaaaatcgtaaatgagcaactga |
40666396 |
T |
|
| Q |
600 |
aaatttgaggaaattgaaaacccttattaatactgcaactatcat |
644 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
40666395 |
aaatttgaggaaattgaaaaaccttattaatactgcagctatcat |
40666351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 1 - 619
Target Start/End: Original strand, 40723010 - 40723629
Alignment:
| Q |
1 |
atagaagagaactccttttgatggtgacatcccaaacttctcaaacttttccgggtgctcaactggatattgaacagtctgcgtacacattaaccaaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40723010 |
atagaagagaactccttttgatggtgacatcccaaacttctcaaacttttccgggtgctcaactggatattgaacagtctgcgtacacattaaccaaaat |
40723109 |
T |
|
| Q |
101 |
cagaaatagataatattggtaaggaaataaggtgtaattaagtactaggaaagatttctgacctcttgcagttcacgcttgacattctcaaggcctccga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40723110 |
cagaaatagataatattggtaaggaaataaggtgtaattaagtactaagaaagatttctgacctcttgcagttcacgcttgacattctcaaggcctccga |
40723209 |
T |
|
| Q |
201 |
tgtcctcccagctgacattaggcacctcaacaacctgttaatacagacattcgtaagaaaacagacagcaaaaaaggaatgacccattgactgatgaagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||| |
|
|
| T |
40723210 |
tgtcctcccagctgacattaggcacctcaacaacatgttaatacagacattcgtaagaaaacagacaacaaaaaaggaatgactcattgactgatcaagt |
40723309 |
T |
|
| Q |
301 |
aatcaactaatgatttctaaatataggagtcg--tataaaaaactaacagtttcgcgtagagctgatgggttgcttgttccaagtgcagtatgcaaatgc |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||| |||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
40723310 |
aatcaactaatgatttctaaatataggagtcggaaagaaaacactaacagtttcacgtagagctgatgggttgcttgttccaagtgcggtatggaaatgc |
40723409 |
T |
|
| Q |
399 |
tcatttgtaactgccatggaatttagtatttcagcatcaatagtctcatcctctaagtcaatgacgtccatcttctccctaatgcattggagagcagctt |
498 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40723410 |
tcatttgtaactgccatagaatttagtatttcagcatcaatagtctcatcctctaagtcaatgacgtccatcttctccctaatgcattgtagagcagctt |
40723509 |
T |
|
| Q |
499 |
cagtgcaaagagcagcaaggtcagcaccaacatacccatgagtattttttgaaattctctccaaatcaacctacagagtaaaatcgtaaatgagcaactg |
598 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||| || | || |
|
|
| T |
40723510 |
cagtgcaaagagcagcaaggtcagcaccaacatacccatgagtatcttttgaaattctctccaaatcaacctacagag-aaagtcgtaaatgtgcgaatg |
40723608 |
T |
|
| Q |
599 |
aaaatttgaggaaattgaaaa |
619 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
40723609 |
aaaatttgaggaaatcgaaaa |
40723629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 739 - 1121
Target Start/End: Original strand, 40723818 - 40724200
Alignment:
| Q |
739 |
aatgcccaacttacatcatcagagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccc |
838 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40723818 |
aatgtccaacttacatcatgagagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccc |
40723917 |
T |
|
| Q |
839 |
tatcaaatctaccaaaccttctcaatgccgggtcaatgctattggggcgattagtggcccccatgacaataacatgagcacgggattttagcccatccat |
938 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40723918 |
tatcaaatctaccaaaccttctcaatgccgggtcaatgctattggggcgattagtggcccccatgacaataacatgagcacgggattttagcccatccat |
40724017 |
T |
|
| Q |
939 |
aagagtcagaagttgtgaaacaatccttctttctacttcaccatttgtcttgtcccgcttgggtgcaatagaatcaatttcatcaataaagatgatggat |
1038 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40724018 |
aagagtcagaagttgtgaaacaatccttctttctacttcaccatttgtcttgtcccgcttgggtgcaatagaatcaatttcatcaataaagatgatggat |
40724117 |
T |
|
| Q |
1039 |
ggtgcattcttttctgcttcttcaaatgctttcctaagattgctttcactctctccagccattttggacataatctctggtcc |
1121 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40724118 |
ggtgcattcttttctgcttcttcaaacgctttcctaagattgctttcactctctccagccagtttggacataatctctggtcc |
40724200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 165; E-Value: 1e-87
Query Start/End: Original strand, 922 - 1121
Target Start/End: Complemental strand, 40666066 - 40665866
Alignment:
| Q |
922 |
gattttagcccatccataagagtcagaagttgtgaaacaatccttctttctacttcaccatttgtcttgtcccgcttgggtgcaatagaatcaatttcat |
1021 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40666066 |
gattctagcccatccataagagtcagaagttgtgagacaatccttctttcaacttcaccgtttgtcttctcccgcttgggtgcaatagaatcaatttcat |
40665967 |
T |
|
| Q |
1022 |
caa-taaagatgatggatggtgcattcttttctgcttcttcaaatgctttcctaagattgctttcactctctccagccattttggacataatctctggtc |
1120 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40665966 |
caaataaagatgatggatggtgcattcttttctgcttcttcaaacgctttcctaagattgctttcactctctccagccagtttggacataatctctggtc |
40665867 |
T |
|
| Q |
1121 |
c |
1121 |
Q |
| |
|
| |
|
|
| T |
40665866 |
c |
40665866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 120; E-Value: 8e-61
Query Start/End: Original strand, 739 - 866
Target Start/End: Complemental strand, 40666229 - 40666102
Alignment:
| Q |
739 |
aatgcccaacttacatcatcagagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccc |
838 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40666229 |
aatgtccaacttacatcatgagagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccc |
40666130 |
T |
|
| Q |
839 |
tatcaaatctaccaaaccttctcaatgc |
866 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
40666129 |
tatcaaatctaccaaaccttctcaatgc |
40666102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 8e-58; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 8e-58
Query Start/End: Original strand, 749 - 1115
Target Start/End: Original strand, 41092655 - 41093021
Alignment:
| Q |
749 |
ttacatcatcagagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccctatcaaatct |
848 |
Q |
| |
|
||||||| || | ||| ||||| || || ||||| || ||||| || ||||| ||||||| || ||||||||||||||||| || ||||||||||| || |
|
|
| T |
41092655 |
ttacatcttcggcgagtttcatattctttgtatgaattcgaagaacctcaagacgcccaacctcgtctggaacaccaatatcaatctccctatcaaacct |
41092754 |
T |
|
| Q |
849 |
accaaaccttctcaatgccgggtcaatgctattggggcgattagtggcccccatgacaataacatgagcacgggattttagcccatccataagagtcaga |
948 |
Q |
| |
|
|||||||| || | ||| ||||||||||||||||| | ||| ||||| ||||| ||||| ||||| ||||| ||||| || ||||||||||| |||| |
|
|
| T |
41092755 |
tccaaacctcctaagtgcagggtcaatgctattgggcctatttgtggctcccataacaattacatgtgcacgtgatttaagaccatccataagggtcaag |
41092854 |
T |
|
| Q |
949 |
agttgtgaaacaatccttctttctacttcaccatttgtcttgtcccgcttgggtgcaatagaatcaatttcatcaataaagatgatggatggtgcattct |
1048 |
Q |
| |
|
||||| || |||||||| || ||||||||||| | || || || ||||| || || || ||||| || |||||||||||||||||||| |||||||||| |
|
|
| T |
41092855 |
agttgggagacaatcctcctctctacttcaccgtgagttttctctcgcttaggagctatggaatctatctcatcaataaagatgatggaaggtgcattct |
41092954 |
T |
|
| Q |
1049 |
tttctgcttcttcaaatgctttcctaagattgctttcactctctccagccattttggacataatctc |
1115 |
Q |
| |
|
| || ||||| |||||||| ||||| ||||||||||||||||| ||||| | ||| ||||| ||||| |
|
|
| T |
41092955 |
tctcagcttcctcaaatgccttccttagattgctttcactctcaccagcaagtttcgacattatctc |
41093021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 393 - 538
Target Start/End: Original strand, 41092395 - 41092540
Alignment:
| Q |
393 |
aaatgctcatttgtaactgccatggaatttagtatttcagcatcaatagtctcatcctctaagtcaatgacgtccatcttctccctaatgcattggagag |
492 |
Q |
| |
|
|||||||||||||| ||||||||||| || | ||||||||||||||| |||||||| || |||||||| |||||||| || ||||| |||||||| || | |
|
|
| T |
41092395 |
aaatgctcatttgtcactgccatggagttcaatatttcagcatcaattgtctcatcttccaagtcaatcacgtccattttttccctgatgcattgaagtg |
41092494 |
T |
|
| Q |
493 |
cagcttcagtgcaaagagcagcaaggtcagcaccaacatacccatg |
538 |
Q |
| |
|
| ||||| || || | |||||| | |||||||||||||| ||||| |
|
|
| T |
41092495 |
ctgcttcggtacacaaagcagctaaatcagcaccaacatagccatg |
41092540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 41092016 - 41092097
Alignment:
| Q |
1 |
atagaagagaactccttttgatggtgacatcccaaacttctcaaacttttccgggtgctcaactggatattgaacagtctgc |
82 |
Q |
| |
|
|||||| |||||||| || || || ||||| |||||||||||||||||||| ||||| || ||||||||||| ||||||||| |
|
|
| T |
41092016 |
atagaaaagaactcccttcgaaggcgacattccaaacttctcaaacttttcagggtgttccactggatattggacagtctgc |
41092097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 41092174 - 41092253
Alignment:
| Q |
158 |
ctgacctcttgcagttcacgcttgacattctcaaggcctccgatgtcctcccagctgacattaggcacctcaacaacctg |
237 |
Q |
| |
|
||||||||||| ||||| | ||| ||||| ||||| || ||||| || ||||||||| ||||||||| ||||||||||| |
|
|
| T |
41092174 |
ctgacctcttggagttccctcttaacattttcaagaccgccgatatcatcccagctgcaattaggcacttcaacaacctg |
41092253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 2e-49; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 763 - 1099
Target Start/End: Complemental strand, 27977635 - 27977299
Alignment:
| Q |
763 |
agcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccctatcaaatctaccaaaccttctca |
862 |
Q |
| |
|
|||||||| ||||| ||||| ||||| || || ||||| || |||| ||||||||| ||||||||||| || |||| |||||| || |||||||| | | |
|
|
| T |
27977635 |
agcttcatattttttgtatggatgcggagaacctcaagacgtccaacttcatctggtacaccaatatcaatctcccgatcaaaccttccaaacctccgaa |
27977536 |
T |
|
| Q |
863 |
atgccgggtcaatgctattggggcgattagtggcccccatgacaataacatgagcacgggattttagcccatccataagagtcagaagttgtgaaacaat |
962 |
Q |
| |
|
|| ||||| ||||||||||| ||||| || || ||||| ||||| ||||| ||||||||||| ||||||||||| || |||| || || |||||||| |
|
|
| T |
27977535 |
gagcagggtcgatgctattgggacgatttgttgctcccataacaattacatgtgcacgggatttaagcccatccatgagggtcaagagctgggaaacaat |
27977436 |
T |
|
| Q |
963 |
ccttctttctacttcaccatttgtcttgtcccgcttgggtgcaatagaatcaatttcatcaataaagatgatggatggtgcattcttttctgcttcttca |
1062 |
Q |
| |
|
|||| || ||||||||||| ||||| |||| ||| || ||||| || || || |||||||| |||||||| || ||||||||||| || |||||||| |
|
|
| T |
27977435 |
tcttcgctcaacttcaccattagtcttctccctctttggagcaatggagtctatctcatcaatgaagatgattgagggtgcattcttctcagcttcttcg |
27977336 |
T |
|
| Q |
1063 |
aatgctttcctaagattgctttcactctctccagcca |
1099 |
Q |
| |
|
||||| ||||| ||||| ||||||||||| ||||||| |
|
|
| T |
27977335 |
aatgccttcctcagattactttcactctcaccagcca |
27977299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 27978318 - 27978237
Alignment:
| Q |
1 |
atagaagagaactccttttgatggtgacatcccaaacttctcaaacttttccgggtgctcaactggatattgaacagtctgc |
82 |
Q |
| |
|
|||||| |||||||| ||||| ||||||||||||||||||||||| || || ||||| || ||||||||||||||||||||| |
|
|
| T |
27978318 |
atagaacagaactccctttgaaggtgacatcccaaacttctcaaatttctcagggtgttccactggatattgaacagtctgc |
27978237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 348 - 538
Target Start/End: Complemental strand, 27977951 - 27977761
Alignment:
| Q |
348 |
gtttcgcgtagagctgatgggttgcttgttccaagtgcagtatgcaaatgctcatttgtaactgccatggaatttagtatttcagcatcaatagtctcat |
447 |
Q |
| |
|
||||| || ||||| || || ||||||| ||||||||| ||| ||||| |||||||| || ||||| || || ||||| ||||||||||| || |||| |
|
|
| T |
27977951 |
gtttcacggagagcagaaggattgcttgatccaagtgcggtactgaaatgttcatttgtgaccgccattgagttaagtatctcagcatcaatggtttcat |
27977852 |
T |
|
| Q |
448 |
cctctaagtcaatgacgtccatcttctccctaatgcattggagagcagcttcagtgcaaagagcagcaaggtcagcaccaacatacccatg |
538 |
Q |
| |
|
| |||| |||||| || ||||| ||||| || ||||| || || ||||| ||||| || | |||||| | |||||||||||||| ||||| |
|
|
| T |
27977851 |
cttctaggtcaatcacatccattttctctctgatgcactgaagtgcagcctcagtacacaaagcagctaaatcagcaccaacataaccatg |
27977761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 933 - 1042
Target Start/End: Complemental strand, 15690360 - 15690253
Alignment:
| Q |
933 |
atccataagagtcagaagttgtgaaacaatccttctttctacttcaccatttgtcttgtcccgcttgggtgcaatagaatcaatttcatcaataaagatg |
1032 |
Q |
| |
|
|||||||||| ||| | |||||||||||||||||| || |||||| || |||||| || | |||||| || ||||||||| |||||||||||||| | |
|
|
| T |
15690360 |
atccataagattcaagacttgtgaaacaatccttctatcaacttcatcacgtgtcttctctc--ttgggtacagtagaatcaaattcatcaataaagaag |
15690263 |
T |
|
| Q |
1033 |
atggatggtg |
1042 |
Q |
| |
|
||| |||||| |
|
|
| T |
15690262 |
atgaatggtg |
15690253 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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