View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17540_high_14 (Length: 317)
Name: NF17540_high_14
Description: NF17540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17540_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 11 - 302
Target Start/End: Complemental strand, 35736482 - 35736191
Alignment:
| Q |
11 |
cacagaccaatatatcatatatcttctgtattaatcataacaaatcttcaatcgactatagtgattatacacatctagccaaaagaaataccaaaacatc |
110 |
Q |
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| T |
35736482 |
cacagaccaatatatcatatatcttcagtattaatcataacaaatcttcaatcgactatagtgattatacacatctagccaaaagaaataccaaaacatc |
35736383 |
T |
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| Q |
111 |
taattcattttagtgtttacagaagaaccattttcaatttaataaaaacagcagaatcaaaatgaggcaaaaatagtagtgacacacaaaacgggggtat |
210 |
Q |
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| T |
35736382 |
taattcattttagtgtttacagaagaaccattttcaatttaataaaaacagcagaatcaaaatgaggcaaaaatagtagtgacacacagaacgggggtat |
35736283 |
T |
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| Q |
211 |
tgggtagggcaactagtttgagctggttaaaggagttggaggacccgggttcaaatctggtgaaggataaaatactagtgtaacaactaatt |
302 |
Q |
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| T |
35736282 |
tgggtagggcaactagtttgagctggttaaaggagttggaggacccgggttcaaatctggtgaaggataaaatactagtgtaacaactaatt |
35736191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 193
Target Start/End: Complemental strand, 44361515 - 44361363
Alignment:
| Q |
39 |
tattaatcataacaaatcttcaatcgactatagtgattatacacatctagccaaaagaaataccaaaacatctaattcattttagtgtttacag-aagaa |
137 |
Q |
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|||||||||||||||| |||||||| |||||| ||| | ||||||||||||||||||||| |||| ||||||||||||| | ||||||||| ||| | |
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| T |
44361515 |
tattaatcataacaaaccttcaatcaactatatagatca--cacatctagccaaaagaaatattaaaatatctaattcatttgattgtttacagaaagca |
44361418 |
T |
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| Q |
138 |
ccattttcaatttaataaaaacagcagaatcaaaatgaggcaaaaatagtagtgac |
193 |
Q |
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| T |
44361417 |
ccattttcaatataatgaaaacagcagaatcaaaatgtggc-aaaatagtagtgac |
44361363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 265
Target Start/End: Complemental strand, 44361329 - 44361281
Alignment:
| Q |
220 |
caactagtttgagct---ggttaaaggagttggaggacccgggttcaaa |
265 |
Q |
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| T |
44361329 |
caactagtttgagctaagggttaaaggagttggaggacccaggttcaaa |
44361281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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