View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17540_high_17 (Length: 265)
Name: NF17540_high_17
Description: NF17540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17540_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 95 - 225
Target Start/End: Original strand, 31918679 - 31918809
Alignment:
| Q |
95 |
aaccaaatatacacgagccccacgtgttctcgtaattccttccgctcagtctcccccaggcactgaaatcaaaagatggaaaacagaacgaacgagaaag |
194 |
Q |
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| T |
31918679 |
aaccaaatatacatgagcctcacgtgttctcgtaattccttcctctcagtctcccccaggcactgaaatcaaaagatggaaaacagaacaaacgagaaag |
31918778 |
T |
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| Q |
195 |
cttcatcactaagatggaaaatccttcgtca |
225 |
Q |
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| T |
31918779 |
cttcatcgctaagatggaaaatccttcgtca |
31918809 |
T |
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Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 31917709 - 31917805
Alignment:
| Q |
8 |
ccaataatatgcgaacacgatttacatatttaatcctcaacaaaagttccacagctgtaaaaaataattttggttcctccaaaatgaaaccaaatat |
104 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31917709 |
ccaaaaatatgcgaacacgatttacatatttaatcctcaacaaaaattccacagctgtaaaaattaattttggttcctccaaaatgaaaccaaatat |
31917805 |
T |
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