View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17540_high_20 (Length: 240)
Name: NF17540_high_20
Description: NF17540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17540_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 35394150 - 35394255
Alignment:
| Q |
1 |
tttccattagctggacaacctatggttcatcatccaatctctgcttgtcaaaaagtattctcactcattcactctcacatttcatattcatatctttaat |
100 |
Q |
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| T |
35394150 |
tttccattagctggacaaccaatggttcatcatccaatctctgcttgtcaaaaagtattctcactcgttcactctcacatttcatattcatatctataat |
35394249 |
T |
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| Q |
101 |
cttctg |
106 |
Q |
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|||||| |
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| T |
35394250 |
cttctg |
35394255 |
T |
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Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 35394325 - 35394406
Alignment:
| Q |
147 |
gccagattcctaatttggctcggatttatctcattggcttctacgaagaacgcgaatttgcattatacgtctctttcatctc |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35394325 |
gccagattcctaatttggctcggatttatctcattggcttctacgaagaacgcgaatttgcattatacgtctcttccatctc |
35394406 |
T |
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