View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17540_high_22 (Length: 232)
Name: NF17540_high_22
Description: NF17540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17540_high_22 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 41 - 232
Target Start/End: Complemental strand, 1878323 - 1878132
Alignment:
| Q |
41 |
aaattagtcaacataaatataatgtttgaaatcaaagtgagtttaacaaaattacgatgatatcgttattttaattttaccaaaatttcatttgtttacc |
140 |
Q |
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| T |
1878323 |
aaattagtcaacagaaatataatgtttgtaatcaaagtgagtttaacaaaattacgatgatatcgatattttaattttaccaaaatttcattcgtttacc |
1878224 |
T |
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| Q |
141 |
gtgattttgtctaacctaccgtctcttgaaaaaggtgataggaaggagaacagaagtaccaacagcataagcataggcaacaaaaacatagt |
232 |
Q |
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| T |
1878223 |
gtgattttgtctaacctaccgtctcttgaaaaaggtgataggaaggagaacagaagtaccaacagcataagcataggcaacaaaaacatagt |
1878132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 140 - 229
Target Start/End: Complemental strand, 1884236 - 1884147
Alignment:
| Q |
140 |
cgtgattttgtctaacctaccgtctcttgaaaaaggtgataggaaggagaacagaagtaccaacagcataagcataggcaacaaaaacat |
229 |
Q |
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| T |
1884236 |
cgtgattctgtcaaacttaccttcttctaaaaaaagtgataggaaggagaaaagaagttgcaacagcataagcataggcaacaaagacat |
1884147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 1890851 - 1890791
Alignment:
| Q |
169 |
aaaaaggtgataggaaggagaacagaagtaccaacagcataagcataggcaacaaaaacat |
229 |
Q |
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| T |
1890851 |
aaaaaagtgataggaaggagaatagcagtaccaatagcataagcataggcaacaaagacat |
1890791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 1895695 - 1895641
Alignment:
| Q |
175 |
gtgataggaaggagaacagaagtaccaacagcataagcataggcaacaaaaacat |
229 |
Q |
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| T |
1895695 |
gtgacaggaagaagaacagaagtaccaacagcataagaataagcaacaaagacat |
1895641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 1911139 - 1911097
Alignment:
| Q |
187 |
agaacagaagtaccaacagcataagcataggcaacaaaaacat |
229 |
Q |
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| T |
1911139 |
agaacagaagtaccaacagcataagcataagcaataaagacat |
1911097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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