View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17540_low_11 (Length: 450)
Name: NF17540_low_11
Description: NF17540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17540_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 150 - 433
Target Start/End: Complemental strand, 46583827 - 46583541
Alignment:
| Q |
150 |
cctatctctcatcaaaatacactaatgtcacctaagtattttcccaaattctaattatttttaatcgatactcctgtatgaaatgctgacagtatgatta |
249 |
Q |
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| T |
46583827 |
cctatctctcatcaaaatacactaatgtcacttaagtattttcccaaattctaattatttttattcgatactcctgtatgaaatgctgacagtatgatta |
46583728 |
T |
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| Q |
250 |
tttttctttttgtcctgctatttctaatgatgattgcaacagtaacaatgtctaattaaaaggtctacaagacgtagaaaacctcctcctgcatacttac |
349 |
Q |
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| T |
46583727 |
tttttctttttgtcctgctatttctaatgatgattgcaacagtaacaatgtctaattaaaaggtctacaagacgtagaaaacctcctcctgcatacttac |
46583628 |
T |
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| Q |
350 |
aagatttctaatgtacttctgtttgaaacagaacttacagacagacagataaatatc---ctaattggaatcaagctatgaattctg |
433 |
Q |
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| T |
46583627 |
aagatttctaatgtaattctgtttgaaacagaacttacagacagacagataagtatcctactaattggaatcaagctatgaattctg |
46583541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 14 - 152
Target Start/End: Complemental strand, 46584008 - 46583870
Alignment:
| Q |
14 |
gaaactacatgttttgtttttgaagggtagaactacatgttttgatgttgcgtttgtatgtatacctttaattccaagtgttcctactcccaatttaaaa |
113 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46584008 |
gaaactacatgttttttttttgaagggtagaactacatgttttgatgttgcgtttgtatgtatacctttaattccaagtgttcctactcccaatttaaaa |
46583909 |
T |
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| Q |
114 |
ttacactagttagtttctcacatatatgctgcttttcct |
152 |
Q |
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| T |
46583908 |
ttacactagttagtttctcacatatatgctgcttttcct |
46583870 |
T |
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