View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17540_low_16 (Length: 291)
Name: NF17540_low_16
Description: NF17540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17540_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 40667083 - 40667353
Alignment:
| Q |
1 |
ttgcttacaatgtggtttggtgaaagtgaggccaatgttagggaaatatttgacaaggctagacaatcagctccatgtgtcctcttttttgatgagcttg |
100 |
Q |
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| T |
40667083 |
ttgcttacaatgtggtttggtgaaagtgatgccaatgttagggaaatttttgacaaggctagacaatcagctccatgtgtcctcttttttgatgagcttg |
40667182 |
T |
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| Q |
101 |
actccattgccactcaggtttgtttctagttactataaactcatgcattgttatgttattatgctttaaccatggctgctactcaagtgaggtatannnn |
200 |
Q |
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| T |
40667183 |
actccattgccactcaggtttgtttctagttactataaactcatgcattgctatgttattatgctttaaccatggctgctactcaagtgaggtatatata |
40667282 |
T |
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| Q |
201 |
nnnnnnnnnnnnngagatcatattattatggcttgtactctgctgcaaaataaaatataaggatatcaagt |
271 |
Q |
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| T |
40667283 |
tatttttttttttgagatcatattattattgcttgtactctgctgcaaaataaagtataaggatatcaagt |
40667353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 4 - 175
Target Start/End: Complemental strand, 40722919 - 40722747
Alignment:
| Q |
4 |
cttacaatgtggtttggtgaaagtgaggccaatgttagggaaatatttgacaaggctagacaatcagctccatgtgtcctcttttttgatgagcttgact |
103 |
Q |
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| T |
40722919 |
cttacaatgtggtttggtgaaagtgaagccaatgttagggaaatttttgacaaggctagacaatcagctccatgtgtcctcttttttgatgagcttgatt |
40722820 |
T |
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| Q |
104 |
ccattgccactcaggtttg-tttctagttactataaactcatgcattgttatgttattatgctttaaccatgg |
175 |
Q |
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| T |
40722819 |
ccattgccactcaggttggttttctagttactataaactcctggattgctatgttattatgctttaacgatgg |
40722747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 41091922 - 41091809
Alignment:
| Q |
7 |
acaatgtggtttggtgaaagtgaggccaatgttagggaaatatttgacaaggctagacaatcagctccatgtgtcctcttttttgatgagcttgactcca |
106 |
Q |
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|||||||||||||| ||||||||||| || || |||||||| ||||||||||| | || |||||||||||||| || |||||||| |||||||||| |
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| T |
41091922 |
acaatgtggtttggagaaagtgaggcaaacgtgagggaaatttttgacaaggcccgtggttctgctccatgtgtcctattctttgatgaacttgactcca |
41091823 |
T |
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| Q |
107 |
ttgccactcaggtt |
120 |
Q |
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|||| ||||||||| |
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| T |
41091822 |
ttgcaactcaggtt |
41091809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 27978407 - 27978528
Alignment:
| Q |
2 |
tgcttacaatgtggtttggtgaaagtgaggccaatgttagggaaatatttgacaaggctagacaatcagctccatgtgtcctcttttttgatgagcttga |
101 |
Q |
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|||| |||||||||||||| ||||||||||| ||||| |||||||| |||||||| ||| | || |||||||||||||| || |||||||| ||||| |
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| T |
27978407 |
tgctcacaatgtggtttggagaaagtgaggctaatgtgagggaaatttttgacaaagctcgtggttctgctccatgtgtccttttctttgatgaacttga |
27978506 |
T |
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| Q |
102 |
ctccattgccactcaggtttgt |
123 |
Q |
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|| ||||| |||||||||||| |
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| T |
27978507 |
ttctattgcaactcaggtttgt |
27978528 |
T |
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