View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17540_low_17 (Length: 271)
Name: NF17540_low_17
Description: NF17540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17540_low_17 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 271
Target Start/End: Complemental strand, 43864484 - 43864224
Alignment:
| Q |
9 |
ccaagaatattgtaagggttatatttagattgcaagaaaccagcaacggccaagagtgaatttggtttggatgcatagtgtaattgtggatcaatatcta |
108 |
Q |
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| T |
43864484 |
ccaaaaatattgtaagggttatatttagattgcaagaaaccagcaacggccaagagtgaatttggtttggatgcatagtgtaattgtggatcaatatcta |
43864385 |
T |
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| Q |
109 |
aaaattgctnnnnnnntaatttgaaaagaccaacctcatcaactttgattataagttaagagtcttccacatctttacatttgatacaatcacttcattc |
208 |
Q |
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| T |
43864384 |
aaaattgctaaaaaa--aaattgaaaagaccaacctcgtcaactttgattataagttaagagtcttccacatctttacatttgatacaatcacttcattc |
43864287 |
T |
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| Q |
209 |
acgttgatttgacaacaacaaaataaatataattataagtttatttttgaggcactgacctgc |
271 |
Q |
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| T |
43864286 |
atgttgatttgacaacaacaaaataaatataattataaatttatttttgaggtactgacctgc |
43864224 |
T |
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