View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17540_low_2 (Length: 688)
Name: NF17540_low_2
Description: NF17540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17540_low_2 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 266 - 688
Target Start/End: Complemental strand, 13371765 - 13371335
Alignment:
| Q |
266 |
acagtctgcatttggctgcaccgtataatcgagtgtagcggatcaacgtccgtgctttatgtctccagcccatcccactcagccttttacatagtcatct |
365 |
Q |
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| T |
13371765 |
acagtctgcatttggctgcaccgtataatcgagtgtagcggatcaacgtccgtgctttatgtctccagcccatcccactcagccttttacatagtcatct |
13371666 |
T |
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| Q |
366 |
aattttgttgtttcgtctctattttgatacctaattaaaattacatatatggtatgatatctcatgatttgttcactctggaatctaacctagctttagg |
465 |
Q |
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| T |
13371665 |
aattttgttgtttcgtctctattttgatacctaattaaaattacatatatggtatgatatctcatgatttgttcactctggaatctaacctagctttagg |
13371566 |
T |
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| Q |
466 |
tctcaccctgcattagttttggcttcaccatgatttacatgtttttggtttattcgccattnnnnnnnngtgtat--------tcccaccacccactcca |
557 |
Q |
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| T |
13371565 |
tctcaccctgcattagttttggcttcaccatgatttacatgtttttggtttattcgccattagaaaaaagtgtattcaccccctcccaccacccactcca |
13371466 |
T |
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| Q |
558 |
cgcctagagatgtgtccaagtaacacgctaattgttttattgattttccataagtactctctacttgagatatttctgtatgaggcactggcgtgcacct |
657 |
Q |
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| T |
13371465 |
cgcctagagatgtgtccaagtaacacgctaattgttttattgattttccataagtactctctacttgagatatttctgtatgaggcactggcgtgcacct |
13371366 |
T |
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| Q |
658 |
cttccaatcaggattcaaatttcagttcatc |
688 |
Q |
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| T |
13371365 |
cttccaatcaggattcaaatttcagttcatc |
13371335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 24 - 226
Target Start/End: Complemental strand, 13371973 - 13371771
Alignment:
| Q |
24 |
tggttaaggagctcagccattgcccattgcattgcttctgctgaggtgtctgtgcctgcaatgaagaggtcctgcaaataagagtaaatattagtttgac |
123 |
Q |
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| T |
13371973 |
tggttaaggagctcagctattgcccattgcatagcttctgctgaggtgtctgtgcctgcaatgaagaggtcctgcaaataagagtaaatattagtttgac |
13371874 |
T |
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| Q |
124 |
aaaacacaaggatggtttaaccaatcacagatcacagccctatcccgaggtagacaggcatatgctttatcagaatggatcgtcaacggtgaagccggct |
223 |
Q |
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| T |
13371873 |
aaaacacaaggatggtttaaccaatcacagatcacagccctatcccgaggtagacaggcatatgctttatcagaatggatcgttaacggtgcagccggct |
13371774 |
T |
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| Q |
224 |
gta |
226 |
Q |
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| T |
13371773 |
gta |
13371771 |
T |
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