View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17540_low_20 (Length: 249)
Name: NF17540_low_20
Description: NF17540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17540_low_20 |
 | |
|
| [»] scaffold0433 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0433 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: scaffold0433
Description:
Target: scaffold0433; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 43 - 241
Target Start/End: Original strand, 1259 - 1452
Alignment:
| Q |
43 |
atttagtgcgtgttttagttttgtagtgatgaaaaattattttgactatttattttagctnnnnnnnnntgttgaacgtaaagtggcttatcaattatca |
142 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
1259 |
atttagtgcgtgttttagttttgtagtgacgaaaagttattttgactatttattttagctaaaaaaaattgttgaatgtaaagtggcttatcaattatca |
1358 |
T |
|
| Q |
143 |
attaacattgacatgacatcggtcgtagaaggtaaaagtggaaagttaaaaccaatttttccctaaaaatgtaatactttcacactcatgaagtataat |
241 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1359 |
attaacattgac-----atcggtcgttgaaggtaaaagtggaaagttaaaaccaattttttcataaaaatgtaatcctttcacactcatgaagtataat |
1452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 7e-64; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 43 - 241
Target Start/End: Complemental strand, 3859418 - 3859225
Alignment:
| Q |
43 |
atttagtgcgtgttttagttttgtagtgatgaaaaattattttgactatttattttagctnnnnnnnnntgttgaacgtaaagtggcttatcaattatca |
142 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
3859418 |
atttagtgcgtgttttagttttgtagtgacgaaaagttattttgactatttattttagctaaaaaaaattgttgaatgtaaagtggcttatcaattatca |
3859319 |
T |
|
| Q |
143 |
attaacattgacatgacatcggtcgtagaaggtaaaagtggaaagttaaaaccaatttttccctaaaaatgtaatactttcacactcatgaagtataat |
241 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3859318 |
attaacattgacat-----cggtcgttgaaggtaaaagtggaaagttaaaaccaattttttcataaaaatgtaatcctttcacactcatgaagtataat |
3859225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 43 - 241
Target Start/End: Complemental strand, 3868175 - 3867982
Alignment:
| Q |
43 |
atttagtgcgtgttttagttttgtagtgatgaaaaattattttgactatttattttagctnnnnnnnnntgttgaacgtaaagtggcttatcaattatca |
142 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
3868175 |
atttagtgcgtgttttagttttgtagtgacgaaaagttattttgactatttattttagctaaaaaaaattgttgaatgtaaagtggcttatcaattatca |
3868076 |
T |
|
| Q |
143 |
attaacattgacatgacatcggtcgtagaaggtaaaagtggaaagttaaaaccaatttttccctaaaaatgtaatactttcacactcatgaagtataat |
241 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3868075 |
attaacattgacat-----cggtcgttgaaggtaaaagtggaaagttaaaaccaattttttcataaaaatgtaatcctttcacactcatgaagtataat |
3867982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 13011625 - 13011655
Alignment:
| Q |
1 |
aatattagaccgataaatttagtgtgtttgt |
31 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
13011625 |
aatattagaccgataaatttagtgtgtttgt |
13011655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University