View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17540_low_24 (Length: 226)
Name: NF17540_low_24
Description: NF17540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17540_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 42535394 - 42535182
Alignment:
| Q |
3 |
tgatgttgatccaatcaacattgctaaatgaaaacaagtatagaaaagtgtagtttttaagatcaaaaaccttgaatatactatcttgcggagagtaggt |
102 |
Q |
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| T |
42535394 |
tgatgttgatccaatcaacattgctaaatgaaaacaagtatagaaaagtgtagtttttaagatcaaaaaccttgaatatactatcttgcgcagagtaggt |
42535295 |
T |
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| Q |
103 |
taggaccttggcattaacatcatcaaatttcacaacaaaagactctgactgaaaaagatcaaaaccggcatccggcttggccctccttatgtcttcaatg |
202 |
Q |
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| T |
42535294 |
taggaccttggcattaacatcatcaaatttcacaacaaaagactctgactgaaaaagatcaaaaccggcatccggcttggccctccttatgtcttcaatg |
42535195 |
T |
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| Q |
203 |
cgtgttgatctgt |
215 |
Q |
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| T |
42535194 |
cgtgttgatctgt |
42535182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 42529672 - 42529460
Alignment:
| Q |
3 |
tgatgttgatccaatcaacattgctaaatgaaaacaagtatagaaaagtgtagtttttaagatcaaaaaccttgaatatactatcttgcggagagtaggt |
102 |
Q |
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|||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||| |
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| T |
42529672 |
tgatgttgatccgttgaacattgctaaatgaaaacgagtatagaaaagtgtagtttttaaggtcaaaaaccttgaacatactatcttgcgcagagtaggt |
42529573 |
T |
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| Q |
103 |
taggaccttggcattaacatcatcaaatttcacaacaaaagactctgactgaaaaagatcaaaaccggcatccggcttggccctccttatgtcttcaatg |
202 |
Q |
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| T |
42529572 |
taagaccttgacattaacatcatcaaattttacaacaaaagaatctgactgaaaaagatcaaaaccggcatccggcttggccctccttgtgtattcaata |
42529473 |
T |
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| Q |
203 |
cgtgttgatctgt |
215 |
Q |
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| T |
42529472 |
cttgttgatctgt |
42529460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 27822207 - 27822153
Alignment:
| Q |
83 |
ctatcttgcggagagtaggttaggaccttggcattaacatcatcaaatttcacaa |
137 |
Q |
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| T |
27822207 |
ctatcctgcgcagagtatgttaggacctttgcattaacatcatcaaattccacaa |
27822153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 27822138 - 27822084
Alignment:
| Q |
140 |
aaagactctgactgaaaaagatcaaaaccggcatccggcttggccctccttatgt |
194 |
Q |
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| T |
27822138 |
aaagactcggactggaaaagaggaaaaccagcatccggcttggccctctttatgt |
27822084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 27822347 - 27822302
Alignment:
| Q |
39 |
agtatagaaaagtgtagtttttaagatcaaaaaccttgaatatact |
84 |
Q |
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||||||| |||||||||||||||||||| || |||||| ||||||| |
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| T |
27822347 |
agtatagcaaagtgtagtttttaagatcgaagaccttgtatatact |
27822302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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