View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17540_low_3 (Length: 655)

Name: NF17540_low_3
Description: NF17540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17540_low_3
NF17540_low_3
[»] chr7 (4 HSPs)
chr7 (1-584)||(5377510-5378095)
chr7 (606-641)||(5377482-5377517)
chr7 (386-419)||(9334236-9334269)
chr7 (382-418)||(23651560-23651596)
[»] chr6 (4 HSPs)
chr6 (1-315)||(19000669-19000984)
chr6 (85-232)||(22324133-22324279)
chr6 (6-89)||(22324299-22324386)
chr6 (367-405)||(19000470-19000508)
[»] chr3 (1 HSPs)
chr3 (382-419)||(53161687-53161724)
[»] chr4 (1 HSPs)
chr4 (384-419)||(18807796-18807831)
[»] scaffold0022 (1 HSPs)
scaffold0022 (386-419)||(152944-152977)
[»] chr5 (1 HSPs)
chr5 (373-405)||(20670620-20670652)


Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Complemental strand, 5378095 - 5377510
Alignment:
Q  1 aaaacgaaaataaattttagagaaaagaataatgcaaattaccattttgcaatgataaaaattgaagccttcaaccttctccatctttttcccttactct 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5378095 aaaacaaaaataaattttagagaaaagaataatgcaaattaccattttgcaatgataaaaattgaagccttcagccttctccatctttttcccttactct 5377996  T
Q  101 actctacaatctaacgtaaaataaaggccagtagagaagatgggaaacaaatactctacacatggcactgttggtgctctattacagtttttgtaagttg 200  Q
     |||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5377995 cctctacaatctaacgtaaaacaaaggccagtagaaaagatgagaaacaaatactctacacatggcactgttggtgctctattacaatttttgtaagttg 5377896  T
Q  201 taaatatcaaaaataaaactgaagggaagttannnnnnnggtgtgtgattagtgggggtagcttttttctttaataactgtcacc--atgtgtgtgatta 298  Q
    ||||||||||||||||||||||||||||||||       |||||||||||||||||||||| ||||||||||||||| |||||||   ||||||||||||    
T  5377895 taaatatcaaaaataaaactgaagggaagttatttttttggtgtgtgattagtgggggtagattttttctttaataattgtcaccgtgtgtgtgtgatta 5377796  T
Q  299 ttagtggataaggctgannnnnnnnaatagcttccattaaataaggacattttgggattt-nnnnnnnggctacgccaaaatatagtattgcatttatta 397  Q
    |||||||||||||||||        |||  |||||||||||||||| |||||| | ||||        | ||||||||||||||| |||||| |||||||    
T  5377795 ttagtggataaggctgattttttttaattacttccattaaataagggcattttagaatttataaaaaagactacgccaaaatataatattgcctttatta 5377696  T
Q  398 ataggtattaataggtatagattattcaaacaatacaatttacattgaagaatttgatttactctaaaattacattagctcaaaaaagttcatcacccaa 497  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5377695 atagatattaataggtatagattattcaaacaatacaatttacattgaagaatttgatttactctaaaattacattagctcaaaaaagttcatcacccaa 5377596  T
Q  498 acacactttaagtcattcttcctttaagattatgctactattaaatttatcnnnnnnnncacaccctaatacacataacaataagag 584  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  5377595 acacactttaagtcattcttcctttaggattatgctactattaaatttatc-aaaaaaacacaccctaatacacataacaataagag 5377510  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 606 - 641
Target Start/End: Complemental strand, 5377517 - 5377482
Alignment:
Q  606 aataagagttttagtaaatcacaaaacacacttaat 641  Q
    |||||||||||||||||||||||||||||| |||||    
T  5377517 aataagagttttagtaaatcacaaaacacaattaat 5377482  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 419
Target Start/End: Original strand, 9334236 - 9334269
Alignment:
Q  386 ttgcatttattaataggtattaataggtatagat 419  Q
    |||| |||||||||||||||||||||||||||||    
T  9334236 ttgcctttattaataggtattaataggtatagat 9334269  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 23651596 - 23651560
Alignment:
Q  382 agtattgcatttattaataggtattaataggtataga 418  Q
    |||||||| |||||||||||||||||||| |||||||    
T  23651596 agtattgcctttattaataggtattaataagtataga 23651560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 19000984 - 19000669
Alignment:
Q  1 aaaacgaaaataaattttagagaaaagaataatgcaaattaccattttgcaatgataaaaattgaagccttcaaccttctccatctttttcccttactct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19000984 aaaacgaaaataaattttagagaaaagaataatgcaaattaccattttgcaatgataaaaattgaagccttcagccttctccatctttttcccttactct 19000885  T
Q  101 actctacaatctaacgtaaaataaaggccagtagagaagatgggaaacaaatactctacacatggcactgttggtgctctattacagtttttgtaagttg 200  Q
     |||||||||||||||||||| |||||||| |||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  19000884 cctctacaatctaacgtaaaacaaaggccaatagaaaagatgagaaacaaatactctatacatggcactgttggtgctctattacagtttttgtaagttg 19000785  T
Q  201 taaatatcaaaaataaaactgaagggaagttannnnnnnggtgtgtgattagtgggggtag-cttttttctttaataactgtcaccatgtgtgtgattat 299  Q
    ||||||||||||||||||||||||||||||||       ||||||||||||||| ||||||  ||||||||||||||||||||||||||||| |||||||    
T  19000784 taaatatcaaaaataaaactgaagggaagttatttttttggtgtgtgattagtgagggtagatttttttctttaataactgtcaccatgtgtttgattat 19000685  T
Q  300 tagtggataaggctga 315  Q
    | ||| ||||||||||    
T  19000684 ttgtgtataaggctga 19000669  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 85 - 232
Target Start/End: Complemental strand, 22324279 - 22324133
Alignment:
Q  85 ctttttcccttactctactctacaatctaacgtaaaat-aaaggccagtagagaagatgggaaacaaatactctacacatggcactgttggtgctctatt 183  Q
    |||||||||||||||| ||||| ||||||||||||||  |||||| |||||| || ||| ||||||| ||||| |||  |||||| |||||||||||| |    
T  22324279 ctttttcccttactctcctctaaaatctaacgtaaaaacaaaggctagtagaaaatatgagaaacaattactcaaca--tggcacggttggtgctctact 22324182  T
Q  184 acagtttttgtaagttgtaaatatcaaaaataaaactgaagggaagtta 232  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||    
T  22324181 acagtttttgtaagttgtaaatataaaaaattaaactgaagggaagtta 22324133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 6 - 89
Target Start/End: Complemental strand, 22324386 - 22324299
Alignment:
Q  6 gaaaataaattttagagaaaagaataatgcaaatt----accattttgcaatgataaaaattgaagccttcaaccttctccatctttt 89  Q
    ||||||||||||||||||||| |||||||||||||    ||||||||||||||  ||||||||||||||||  |||||||||||||||    
T  22324386 gaaaataaattttagagaaaataataatgcaaatttcctaccattttgcaatgcaaaaaattgaagccttcggccttctccatctttt 22324299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 367 - 405
Target Start/End: Complemental strand, 19000508 - 19000470
Alignment:
Q  367 gctacgccaaaatatagtattgcatttattaataggtat 405  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  19000508 gctacaccaaaatatagtattgcctttattaataggtat 19000470  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 53161687 - 53161724
Alignment:
Q  382 agtattgcatttattaataggtattaataggtatagat 419  Q
    |||||||| |||||||||||||||||||||||||||||    
T  53161687 agtattgcctttattaataggtattaataggtatagat 53161724  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 419
Target Start/End: Complemental strand, 18807831 - 18807796
Alignment:
Q  384 tattgcatttattaataggtattaataggtatagat 419  Q
    |||||| |||||||||||||||||||||||||||||    
T  18807831 tattgcctttattaataggtattaataggtatagat 18807796  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 419
Target Start/End: Original strand, 152944 - 152977
Alignment:
Q  386 ttgcatttattaataggtattaataggtatagat 419  Q
    |||| |||||||||||||||||||||||||||||    
T  152944 ttgcctttattaataggtattaataggtatagat 152977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 373 - 405
Target Start/End: Original strand, 20670620 - 20670652
Alignment:
Q  373 ccaaaatatagtattgcatttattaataggtat 405  Q
    |||||| ||||||||||||||||||||||||||    
T  20670620 ccaaaaaatagtattgcatttattaataggtat 20670652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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