View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17540_low_5 (Length: 570)
Name: NF17540_low_5
Description: NF17540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17540_low_5 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 474; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 13 - 570
Target Start/End: Complemental strand, 1878154 - 1877592
Alignment:
| Q |
13 |
agcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgcttgcaatcacc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1878154 |
agcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacgtcactgaattcattgcttgcaatcacc |
1878055 |
T |
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| Q |
113 |
acaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttctatgtgttttaagttctataccttacacaacaatggcaaaccttgttgaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1878054 |
acaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttctatgtgttttaagttctataccttacacaacaatggcaaaccttgttgaaa |
1877955 |
T |
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| Q |
213 |
ttcagaatatatggtatatgttcttaatgatg------atgagtttttgagttgaccatctttttaatcaaaaaccaaaatgaaagttaaaagctggttg |
306 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1877954 |
ttcagaatatatggtatatgttcttaatgatgatgatgatgagtttttgagttgaccatctttttaatcaaaaaccaaaatgaaagttaaaagctggttg |
1877855 |
T |
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| Q |
307 |
tcttaaattaagatacactcaaaagactttcttattatattattttgagtcatgtgattagtttaatactataattttgatgagatggtgttgacaaaat |
406 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1877854 |
tcttaaattaagatacactcagaagactttcttattatattattttgagtcatgtgattagtttaatactataattttgataagatggtgttgacaaaat |
1877755 |
T |
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| Q |
407 |
atcttaaaagttttgtaaattaatagtattattttgttaccatttacatggaaaattgggccatgatatgaatataacnnnnnnnnntcttttcacattg |
506 |
Q |
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| T |
1877754 |
atcttaaaagttttgtaaattaatagtattattttgttaccatttacatggaaaattggg-catgatatcaatataataaaaaaaaatcttttcacattg |
1877656 |
T |
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| Q |
507 |
tcgcactcccaatttttcgatttcaaaactcaaaaatgaaggattttttaacgtgttttgtgct |
570 |
Q |
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| T |
1877655 |
tcgcactcccaatttttcgattttaaaactcaaaaatgaaagattttttaacgtgtttcgtgct |
1877592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 1884166 - 1883959
Alignment:
| Q |
13 |
agcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgcttgcaatcacc |
112 |
Q |
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||||||||||||||| |||| |||||||||||||||||||| ||||||||| | ||| | | |||||||| ||| ||||||||| | |||||| |
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| T |
1884166 |
agcataggcaacaaagacatgattgttcatcccttgaagtgtagctgctttgaacaaagtcagtaaagccatgtcaacacattcattgcctataatcaca |
1884067 |
T |
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| Q |
113 |
acaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttctatgtgttttaagttctataccttacacaacaatggcaaaccttgttgaaa |
212 |
Q |
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||| ||| |||||||||||||||||||||| | ||||||||||||||||||||||| |||||| ||| | || |||||||| |||||||||||||| |
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| T |
1884066 |
acaggtggcagaaaatccatgtaaaaggaccgttttcttgtcatctttctatgtgttctaagttttatcctatatacaacaatcacaaaccttgttgaag |
1883967 |
T |
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| Q |
213 |
ttcagaat |
220 |
Q |
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|||||||| |
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| T |
1883966 |
ttcagaat |
1883959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 1890810 - 1890740
Alignment:
| Q |
13 |
agcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagcca |
83 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||||||| | ||| ||| |||||||| |
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| T |
1890810 |
agcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagcca |
1890740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 1911116 - 1910967
Alignment:
| Q |
13 |
agcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgcttgcaatcacc |
112 |
Q |
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|||||| |||| ||| |||| |||||||||||||||||||| ||||||||| | ||| ||| |||||||| ||| | |||||| || | |||||| |
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| T |
1911116 |
agcataagcaataaagacatgattgttcatcccttgaagtgtagctgctttgaacaaagtgagtaaagccatgtcaatacattcatagcatataatcaca |
1911017 |
T |
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| Q |
113 |
acaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttct |
162 |
Q |
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|| ||| |||| ||||||||| |||||||||||||||||||| ||||| |
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| T |
1911016 |
gcaggtggcagaacatccatgtacaaggaccatcttcttgtcatgtttct |
1910967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 1902071 - 1901922
Alignment:
| Q |
13 |
agcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgcttgcaatcacc |
112 |
Q |
| |
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|||||| |||| ||| |||| ||||||||||||||||||||| | |||||| | ||| ||| |||||||| ||| ||||||||| | ||||||| |
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| T |
1902071 |
agcataagcaataaagacatggttgttcatcccttgaagtgttacagctttgaacaaagtgagtaaagccatgtcagaacattcattgcctataatcacc |
1901972 |
T |
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| Q |
113 |
acaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttct |
162 |
Q |
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||| ||| | || ||||||||||| ||||||||||||||||| ||||| |
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| T |
1901971 |
acaggtggcaaaacatccatgtaaagtgaccatcttcttgtcatgtttct |
1901922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 1895653 - 1895509
Alignment:
| Q |
20 |
gcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgcttgcaatcaccacaattg |
119 |
Q |
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|||||||| |||| |||||||||||||||| ||||||||||||| | ||| ||| |||||||| ||| | ||| | | | ||||| | ||||| |
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| T |
1895653 |
gcaacaaagacatggttgttcatcccttgatttgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcactaaaattg |
1895554 |
T |
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| Q |
120 |
gtagaaaatccatgtaaaaggaccatcttcttgtcatctttctat |
164 |
Q |
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| | || |||||||||||||||||||||||||||||| ||||||| |
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| T |
1895553 |
gcaaaacatccatgtaaaaggaccatcttcttgtcatgtttctat |
1895509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 11549179 - 11549123
Alignment:
| Q |
106 |
aatcaccacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttct |
162 |
Q |
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|||||| |||| |||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
11549179 |
aatcactacaaccggtagaaaatccatgtaaaaagaccatcttcttttcatctttct |
11549123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 11537506 - 11537453
Alignment:
| Q |
106 |
aatcaccacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctt |
159 |
Q |
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|||||| |||| |||||||||||| |||||||| || ||||||||| ||||||| |
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| T |
11537506 |
aatcactacaactggtagaaaatctatgtaaaaagatcatcttcttttcatctt |
11537453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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