View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17540_low_6 (Length: 540)
Name: NF17540_low_6
Description: NF17540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17540_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 21 - 528
Target Start/End: Original strand, 43855823 - 43856330
Alignment:
| Q |
21 |
agtagtcctctattcaaagctctagagcttggagttcttttttgcctctggttctcctttaacatctactttaacatctacaacaaacaggtcttgaagg |
120 |
Q |
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| T |
43855823 |
agtagtcctctattcaaagctctagagcttggagttcttttttgcctctggttctcctttaacatctactttaacatctacaacaaacaggtcttgaagg |
43855922 |
T |
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| Q |
121 |
tttaccatttaccagtaactctcactgcttttcaatttgctattggcacactccttgtagcattcatgtggggtcttaatctttataaaaggccaaaact |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43855923 |
tttaccatttaccagtaactctcactgcttttcaatttgctattggcacactccttgtagcattcatgtggggtcttaatctttataaaaggccaaaact |
43856022 |
T |
|
| Q |
221 |
cacttcttcacaggtacttattttaatccttgttatatttttactgttctatttgttctgttttgtaatattaatggttctgttatttctctgattttgc |
320 |
Q |
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| T |
43856023 |
cacttcttcacaggtacttattttaatccttgttatatttttactgttctatttgttctgttttgtaatattaatggttctgttatttctctgattttgc |
43856122 |
T |
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| Q |
321 |
agcttttagcaatatttcctttggctttggtacatacattagggaaccttttcactaacatgagtcttggaaaggttgctgtctcttttactcatactgt |
420 |
Q |
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| T |
43856123 |
agcttttagcaatatttcctttggctttggtacatacattagggaatcttttcactaacatgagtcttggaaaggttgctgtctcttttactcatactgt |
43856222 |
T |
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| Q |
421 |
taaatcaatggagcctttcttttctgtccttctgtcttctacgttccttggagaggtaaggtcaccagattatgctactgttatgaaattttaaatttaa |
520 |
Q |
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| T |
43856223 |
taaatcaatggagcctttcttttctgtccttctgtcttctacgttccttggagaggtaaggtcaccagattatgctactgttatgaaattttaaatttaa |
43856322 |
T |
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| Q |
521 |
ctttgatg |
528 |
Q |
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|||||||| |
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| T |
43856323 |
ctttgatg |
43856330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 328 - 477
Target Start/End: Original strand, 34909985 - 34910134
Alignment:
| Q |
328 |
agcaatatttcctttggctttggtacatacattagggaaccttttcactaacatgagtcttggaaaggttgctgtctcttttactcatactgttaaatca |
427 |
Q |
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|||||||||||| | ||| | || ||||| || ||||| |||||||| || ||||||||||||||||| ||||| || |||||||| || ||||| | |
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| T |
34909985 |
agcaatatttccactcgctatcgtgcatactttggggaatcttttcaccaatatgagtcttggaaaggtggctgtgtcatttactcacacaattaaagct |
34910084 |
T |
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| Q |
428 |
atggagcctttcttttctgtccttctgtcttctacgttccttggagaggt |
477 |
Q |
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| T |
34910085 |
atggagcctttcttttctgtcatcctttctgccatgttccttggagaggt |
34910134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 441
Target Start/End: Original strand, 780307 - 780395
Alignment:
| Q |
353 |
catacattagggaaccttttcactaacatgagtcttggaaaggttgctgtctcttttactcatactgttaaatcaatggagcctttctt |
441 |
Q |
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|||||||||||||||||||| || ||||| |||||||| |||||||| || ||||| ||||| || | ||||| ||||| |||||||| |
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| T |
780307 |
catacattagggaaccttttgacgaacattagtcttggcaaggttgccgtatctttcactcacaccatcaaatctatggaacctttctt |
780395 |
T |
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