View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17540_low_7 (Length: 536)
Name: NF17540_low_7
Description: NF17540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17540_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 344
Target Start/End: Complemental strand, 7214860 - 7214534
Alignment:
| Q |
17 |
cataaactatgttttatttgaaaaggctataaattgatcttttgtttaaaacgttaannnnnnnnncctagttccttagtggaaaatttaaatggacgga |
116 |
Q |
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| T |
7214860 |
cataaactatgttttatttgaaaaagctataaattgatcttttgtttaaaacgttaatttttttttcctagttccttagtggaaaatttaaatggacgga |
7214761 |
T |
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| Q |
117 |
aggtgtcaatagagtgttgacattattgtactataacaatattttcctactattttatttacggttttagtagaaaattcttaagagaaagtatagttgt |
216 |
Q |
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| T |
7214760 |
aggtgtcaatagagtgttgacattattgtactataacaatattttcctactattttatttacggttttagtagaaaattcttaagagaaagtatagttgt |
7214661 |
T |
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| Q |
217 |
acttaataaaggccctaattgcaataatggagaaacattatttagacnnnnnnntatatgttgttaatttgattatctgagtgcaaaacaactactacta |
316 |
Q |
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| T |
7214660 |
acttaataaaggccctgattgcaataatggagaaacattatttagac-aaaaaatatatgttgttaatttgattatctgagtgcaaaacaactactacta |
7214562 |
T |
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| Q |
317 |
gtatataagaatattttggaacaactat |
344 |
Q |
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||||||||||||||||||||||| |||| |
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| T |
7214561 |
gtatataagaatattttggaacagctat |
7214534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 409 - 521
Target Start/End: Complemental strand, 7214469 - 7214358
Alignment:
| Q |
409 |
tttggagcttctctcatgtcaacattaagagcataataatctttacaaattggatttgatttataatgtattaaaattcagttcaatcatatatgtgatg |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7214469 |
tttggagcttctctcatgtcaacattaagagcataataatctttacaa-ttggatttgatttataatgtattaaaattcagttcaatcatatatgtgatg |
7214371 |
T |
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| Q |
509 |
cagtattgttggt |
521 |
Q |
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| T |
7214370 |
cagtattgttggt |
7214358 |
T |
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