View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17540_low_8 (Length: 524)
Name: NF17540_low_8
Description: NF17540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17540_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 72 - 510
Target Start/End: Original strand, 32361370 - 32361800
Alignment:
| Q |
72 |
aaaaatacaacctagctagtcatcccataatggacacttgtctctatctgatattggactccaatctccaaagcactactactattgaatattgataatt |
171 |
Q |
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| T |
32361370 |
aaaaatacaacctagctagtcatcccataatggacacttgtctctatctgatattggactccaatctccaaagcactactactattgaatattgataatt |
32361469 |
T |
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| Q |
172 |
gagttgagagcaagtgcatgatgtgtccaatgtgctattttatcagtannnnnnnnnnnnnnnnncgggttgtgatcaatgttaaggaccaaataagcac |
271 |
Q |
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| T |
32361470 |
gagttgagagcaagtgcatgatgtgtccaatgtgctattttatcggtatgtgtgt----------cgggttgtgatcaatgttaaggaccaaataagcac |
32361559 |
T |
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| Q |
272 |
taccccagatggaactctcagctctccataccacaatttccacaaatgcaactcatagacatagtattattcacctatggaaaacaatagtatactcaaa |
371 |
Q |
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| T |
32361560 |
taccccagatggaactctcagctctccataccacaatttccacaaatgcaactcatagacatagtattattcacctatggaaaacaatagtatactcaaa |
32361659 |
T |
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| Q |
372 |
tctcaataagtcaatatatataccatactggacacagcacataaatatcactatctatgtcagtagtactgtgcctagtatagctat--atatggtttca |
469 |
Q |
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| T |
32361660 |
tctcaatacgtcaatatatataccatactggacacagcacataaatatcactatctatgtcagttgtactgtgcctggtatagctatacatatggtttca |
32361759 |
T |
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| Q |
470 |
ctttggattaacttactaaaaaatacaccccacagaattat |
510 |
Q |
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| T |
32361760 |
ctttggattaacttactaaaaaatacaccccacagaattat |
32361800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 64
Target Start/End: Original strand, 32361319 - 32361348
Alignment:
| Q |
35 |
aagttatgaatgaactggaacaggtaatta |
64 |
Q |
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| T |
32361319 |
aagttatgaatgaactggaacaggtaatta |
32361348 |
T |
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