View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17540_low_9 (Length: 476)
Name: NF17540_low_9
Description: NF17540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17540_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 40723010 - 40723482
Alignment:
| Q |
1 |
atagaagagaactccttttgatggtgacatcccaaacttctcaaacttttccgggtgctcaactggatattgaacagtctgcgtacacattaaccaaaat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40723010 |
atagaagagaactccttttgatggtgacatcccaaacttctcaaacttttccgggtgctcaactggatattgaacagtctgcgtacacattaaccaaaat |
40723109 |
T |
|
| Q |
101 |
cagaaatagataatattggtaaggaaataaggtgtaattaagtactaggaaagatttctgacctcttgcagttcacgcttgacattctcaaggcctccga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40723110 |
cagaaatagataatattggtaaggaaataaggtgtaattaagtactaagaaagatttctgacctcttgcagttcacgcttgacattctcaaggcctccga |
40723209 |
T |
|
| Q |
201 |
tgtcctcccagctgacattaggcacctcaacaacctgttaatacagacattcgtaagaaaacagacagcaaaaaaggaatgacccattgactgatgaagt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||| |
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| T |
40723210 |
tgtcctcccagctgacattaggcacctcaacaacatgttaatacagacattcgtaagaaaacagacaacaaaaaaggaatgactcattgactgatcaagt |
40723309 |
T |
|
| Q |
301 |
aatcaactaatgatttctaaatataggagtcg--tataaaaaactaacagtttcgcgtagagctgatgggttgcttgttccaagtgcagtatgcaaatgc |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||| |||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
40723310 |
aatcaactaatgatttctaaatataggagtcggaaagaaaacactaacagtttcacgtagagctgatgggttgcttgttccaagtgcggtatggaaatgc |
40723409 |
T |
|
| Q |
399 |
tcatttgtaactgccatggaatttagtatttcagcatcaatagtctcatcctctaagtcgatgatgtccatct |
471 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
40723410 |
tcatttgtaactgccatagaatttagtatttcagcatcaatagtctcatcctctaagtcaatgacgtccatct |
40723482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 40666995 - 40666524
Alignment:
| Q |
1 |
atagaagagaactccttttgatggtgacatcccaaacttctcaaacttttccgggtgctcaactggatattgaacagtctgcgtacacattaaccaaaat |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||| |
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|
| T |
40666995 |
atagaagagaactcctttggatggtgacatcccaaacttctcaaacttttccgggtgctcaaccggatattgaacagtctacgtacacacaaaccaaaat |
40666896 |
T |
|
| Q |
101 |
cagaaatagataatattggtaaggaaataaggtgtaattaagtactaggaaagatttctgacctcttgcagttcacgcttgacattctcaaggcctccga |
200 |
Q |
| |
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|||||| || ||| | | |||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40666895 |
cagaaacaggtaaaactagtaaggaaatcaggtgtaattaagtagtaggaaagatttatgacctcttgcagttcacgcttgacattctcaaggcctccga |
40666796 |
T |
|
| Q |
201 |
tgtcctcccagctgacattaggcacctcaacaacctgttaatacagacattcgtaagaaaacagacagcaaaaaaggaatgacccattgactgatgaagt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
40666795 |
tgtcctcccagctgacattaggcacctcaacaacctgttaatacagacattcgtaagaaaacagacagcaaaaaaggaatgacccattgactgatcaagt |
40666696 |
T |
|
| Q |
301 |
aatcaactaatgatttctaaatataggagtcgtataa-aaaactaacagtttcgcgtagagctgatgggttgcttgttccaagtgcagtatgcaaatgct |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40666695 |
aatcaactaatgatttctaaatataggagtcgtataaaaaaactaacagtttcgcgtagagctgatgggttgcttgttccaagtgcagtatgcaaatgct |
40666596 |
T |
|
| Q |
400 |
catttgtaactgccatggaatttagtatttcagcatcaatagtctcatcctctaagtcgatgatgtccatct |
471 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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|
| T |
40666595 |
catttgtaactgccatggaatttagtatttcagcatcaatagtctcatcctctaagtcaatgacgtccatct |
40666524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 27978318 - 27978237
Alignment:
| Q |
1 |
atagaagagaactccttttgatggtgacatcccaaacttctcaaacttttccgggtgctcaactggatattgaacagtctgc |
82 |
Q |
| |
|
|||||| |||||||| ||||| ||||||||||||||||||||||| || || ||||| || ||||||||||||||||||||| |
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|
| T |
27978318 |
atagaacagaactccctttgaaggtgacatcccaaacttctcaaatttctcagggtgttccactggatattgaacagtctgc |
27978237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 27978158 - 27978082
Alignment:
| Q |
161 |
acctcttgcagttcacgcttgacattctcaaggcctccgatgtcctcccagctgacattaggcacctcaacaacctg |
237 |
Q |
| |
|
||||| || ||||| ||||| ||||| ||||| || || || || |||||||||||||| ||||| ||||||||||| |
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| T |
27978158 |
acctcctggagttctcgcttaacattttcaagaccaccaatatcttcccagctgacattgggcacttcaacaacctg |
27978082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 41092016 - 41092097
Alignment:
| Q |
1 |
atagaagagaactccttttgatggtgacatcccaaacttctcaaacttttccgggtgctcaactggatattgaacagtctgc |
82 |
Q |
| |
|
|||||| |||||||| || || || ||||| |||||||||||||||||||| ||||| || ||||||||||| ||||||||| |
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|
| T |
41092016 |
atagaaaagaactcccttcgaaggcgacattccaaacttctcaaacttttcagggtgttccactggatattggacagtctgc |
41092097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 457
Target Start/End: Original strand, 41092395 - 41092459
Alignment:
| Q |
393 |
aaatgctcatttgtaactgccatggaatttagtatttcagcatcaatagtctcatcctctaagtc |
457 |
Q |
| |
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|||||||||||||| ||||||||||| || | ||||||||||||||| |||||||| || ||||| |
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|
| T |
41092395 |
aaatgctcatttgtcactgccatggagttcaatatttcagcatcaattgtctcatcttccaagtc |
41092459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 41092174 - 41092253
Alignment:
| Q |
158 |
ctgacctcttgcagttcacgcttgacattctcaaggcctccgatgtcctcccagctgacattaggcacctcaacaacctg |
237 |
Q |
| |
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||||||||||| ||||| | ||| ||||| ||||| || ||||| || ||||||||| ||||||||| ||||||||||| |
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|
| T |
41092174 |
ctgacctcttggagttccctcttaacattttcaagaccgccgatatcatcccagctgcaattaggcacttcaacaacctg |
41092253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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